Array 1 91418-90975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITU01000082.1 Paenibacillus xylanivorans strain A59 contig_719, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 91417 33 100.0 34 ................................. TCCTTTCTTTATAAATCAGACAATCTTGTCCCTG 91350 33 97.0 35 .......................A......... CTCCTTGGTGGTCGCGGCTACATTGTCAAACCGCG 91282 33 100.0 36 ................................. AGAACTATCGAGTCCGTGATCGTGTATATGACTTCG 91213 33 100.0 38 ................................. GTTAAGGTAGATAAGGGATTGTTGATCGCAGATAGNNN 91142 33 78.8 34 NNNNNNN.......................... AATAAAGCAGTTGATAAGATTAAAAATGTAATAA 91075 33 100.0 35 ................................. AAAAAGGGTATTGAAGAAGCCAAGCAAGACATGAA 91007 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 96.5 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : AGTAGGTGACATATTAAATGCTGGTGCTCATTACATATGATGTGAGTACGACAGACAGTGAAGGCCGAAGACGATTATCCCGAATAGCCAAGAAATGTGTTGATTATGGTCAGCGGGTGCAAAATTCAGTCTTCGAATGTTTGCTGGATGCGGCCCAATTCAAGAAATTGCAATTGGAGCTGGAAGCGATGATTGATAAGAAAACAGACAGCTTACGGTTCTACAATCTCGGCGATAATTATAAAAGCAAGGTGCAGCATGTTGGAACGAAAGCATCTTACGATATGGGCGATCCCCTCATCCTGTAGCAGGTGCGAATGCCAAGCTCACATGATTTTCCCGGGGGATTCGCACCTCAGATTTTGTCGAAATCCTCTTTTTTGTGACCTTTTGGCAACGATTTTATGGGCAGTTGGGATTGCTCGCTATGCGTTTGTTATAAAAGTATCGAAAAAACGTAATTATACTAGTGAATTGCTGTATGTACGTTCTTTTTCGCG # Right flank : CAGCTCCGCAGTTGTACGTAAACGATACCAATNNNNNNNNNNCTCTGTATGGAGTGCGTGGATTGAAATATTCAAGAGTTGTTGGCTCCCAAGGAAGGAGCGGAAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTCCACACCCATACATTTTTATAGAAAATTATANNNNNNNNNNCTGTATGGAGTGCGTGGATTGAAATTGCATCATGGGCAGATTTTAACGGTCAAATTGTNNNNNNNNNNCTCTGTATGGAGTGCGTGGATTGAAATGCATGAAACTGCTGAATCTTGGGGCTATCNNNNNNNNNNTCTGTATGGAGTGCGTGGATTGAAATACCTGCTTGTCTTGCACGAGCTGCCGAGCATACTGGTCGCACTCTGTATGGAGTGCGTGGATTGAAATACTCTATTGGGCGTAAAACCTGAACCGTTTTTCAAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCATTCCCATTGCCTCTATTTGAG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 2 100747-99894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITU01000082.1 Paenibacillus xylanivorans strain A59 contig_719, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 100746 35 100.0 34 ................................... TAGGTAAAACGAACGTGCCTCAACGATCGGCAAC 100677 35 100.0 35 ................................... GCCAAGCAGGCCGTAATTGATATCAATAACTCCAC 100607 35 100.0 35 ................................... GCTACCTGCCGTTTCATTGGACGCCCTTTTGCANN 100537 35 74.3 34 NNNNNNNN...T....................... TATTACTGTTTGCTTTTTTTGTGGATGTGTATNN 100468 35 77.1 32 NNNNNNNN........................... AAGGATGCTTTTTGATCAGCTTCCATGGAGTC 100401 35 100.0 32 ................................... AGGTAAAGTATACAAGACTCCCCCATCATCAC 100334 35 97.1 34 T.................................. ATCGTCTAACGATCTCCCCGATCCATTGTTTCAC 100265 35 100.0 33 ................................... ATAATGGATCTCACTCGAAACTCAATATTCGCG 100197 35 100.0 31 ................................... AGCAATTGAATCTTCGAATTGTTGAGCTTGA 100131 35 71.4 33 NNNNNNNNNN......................... TACCTTCGCAAATTGCGTTGCACTCTATTTTTT 100063 35 94.3 33 .G.........T....................... TTTGAAGAAGTGACAGGCACTAAGGTCTCTTCA 99995 35 88.6 32 AA.........T.........A............. ATTGGTTACCCTCTCCTTCCTGACCCACCGAC 99928 35 91.4 0 A......................A.....C..... | ========== ====== ====== ====== =================================== =================================== ================== 13 35 91.9 33 CTGTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GCGCCTGAGCAAATTGCTCTGCCGATGGACCTGTCGCACTCCGTATGGAGTGCGTGGATTGAGATTTACTTGTTATCTGTTTATGGTGGACTGGGTACCTGTCGCACTCCGTATGGAGTGCGTGGATTGAAATCGAAACGTATGTCAAAGTTCTAACGGTATACGTTGTCGCACTCCGTATGGAGTGCGTGGATTGAAATTACTTCGTATCCCGCATTCATGAGTGCNNNNNNNNNNCCACGCACTCCATACGGAGTGCGACCCCTTACTTGAGAATAAACGCTCAGTCTTCAGTAAAATTTCAATCCACGCTCTCCATACGGAGTGCGACCGATTACATTCGCAGCACCCGCGCTCGAAGTCNNNNNNNNNNCGTATGGAGTGCGTGGATTGAAATTAAGAAAATCGAAGATTTGGCTACTGGTAAANNNNNNNNNNTCCGTATGGAGTGCGTGGATTGAAATTTATCAGCGAAGTACAGCAGGCCACCAGTCATACAC # Right flank : ATGCCTTACTCCTTTGGATGTTAAAGTTAACAGACTTACCACTTTCTACATTAACCTGTAGCATGAGGTAAGTTTTTTTTGCATATTCTTATTCCTTCTCGAAAAATTACATAATATTCTAAAAATATAGTATTTATAAAAGGAATATGTATTATTGTGTCGAAAGTAAATCATAAGTCTTTTTACCTATATATATGGGTTTAATGTCTTGAAATTCGGTGGAGGTGAGAGGGTATGACCTATATTGCTCATATTCGTCAACAAGATGGAGCCATTCAGACGGTTCAAGATCATTTGATTGAGGTTCAGCAGGGAGCGGAGCGAGTTGGTGAGAAGATTGGCGTCAAATATTTAGCAGGAATTGCGGGACTGTTACATGATTTAGGAAAAAATACAGACCAGTTCAGGGATTATATTCAGGATGCTGTCGCAAATCCGGATGCTCCTCCTCGAAAAGGTTCGGTCGATCATTCAACCGCTGGTGGACGTTTGTTACATCG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.50,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 3 106401-105223 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITU01000082.1 Paenibacillus xylanivorans strain A59 contig_719, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 106400 34 100.0 32 .................................. CAGAAAGGTTAGTACCATATTTGGAGAGCANN 106334 34 76.5 36 NNNNNNNN.......................... TTCGCTAAGGCATGTTATACGTGATCATGAGCGACC 106264 34 100.0 36 .................................. TGTACGGCGGTACGGCTGACATGGGAATCCATGACC 106194 34 100.0 33 .................................. TAAGCTCCAAGGGGGATACCTTTATAGTACNNN 106127 34 79.4 34 NNNNNNN........................... GGCTATCACATGTATCAGAAGACCAAGGACATTC 106059 34 100.0 33 .................................. GTTGAAAGATCGAAAACTCAAGGCGGATATTGC 105992 34 100.0 34 .................................. ATTTAGAGTAGCAAAAGATCCTCCCCAGTTTACC 105924 34 100.0 32 .................................. ATCCAGTCCGTATTGCAGACGATCGCCGCNNN 105858 34 79.4 34 NNNNNNN........................... TCTGCTCTCATGCATGGTTGGCATAGATATATGT 105790 34 100.0 34 .................................. CTGCATGAGCAGTCCGGCCACAGGCTCCTGGCGC 105722 34 94.1 36 ..........A.G..................... CCTACGGCGCACCATAGCCTGTTTTGATACGTGACC 105652 34 100.0 35 .................................. ATGTTACCAATAAGAGATAACATAAAAAAATAACC 105583 34 100.0 36 .................................. GATACATTGGACTACATGTACAAGTACGCTACGGNN 105513 34 76.5 36 NNNNNNNN.......................... GCATCGCCTCCGATTTAGGTTCGGGGCTACGCTACC 105443 34 100.0 16 .................................. TAAATGACTCAGGTAA Deletion [105394] 105393 34 70.6 34 AA.TCA.AATA.G..................... TTTGCATCCGCCTCGGTAATCGTAAAGTTGAAGG 105325 34 97.1 35 ..................A............... ATGAGGAAGTCCCAGAGCTGAGTGGCTGCCGTCCG 105256 34 76.5 0 AT..A.T..TT..........TA........... | ========== ====== ====== ====== ================================== ==================================== ================== 18 34 91.7 33 TGTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : AGCCGGACATTCTGCTCTTCGACGAGCCGACATCGGCACTCGATCCCGAGCTGACCGGAGAAGTGCTGCGCGTCATCAAGCAGCTGGCGCAGGAGAACATGACGATGATGATCGTCACCCATGAGATGAGCTTTGCCCGCGATGTTGCGGATCGTGTTTTCTTCATGGATAACGGCGAAATTGCCGAAGCGGGACCGCCCGAGCAGATTTTTGGCAATCCCAAGCTGGAGCGTACGCGCACGTTTTTGCAGCGGGTGGAAGTGGAAGGGTAGAAAGTGGTTGTATGGGGCAGTAGACAGGTGCGAATGCCAAGCTCCCATAAAATCCCCGGGGGATTAGCACCTCAGATTTTGTCGAAAGGGTCATTTTTGTGACCTTTTGGCAACGGTTCTATTGAATATATTGGGTTTGATATATTAAAATGGTTGTATGATTAGCAAGAAATAGTGAAAGAACGTAATGATATTATTAAAAGTAGTATTGTTACGTTCTTTTTTCGC # Right flank : CGGTGAGTGAAGGGCGGAATTAAAGGCAAGGATTTTCTTAGGTTATTTCAGATCTTTTCGCTATGTATGATCTCCTTATTCTTAAACTGCTCTAAACATGCATGCTTCACGTTTTTGGCCAATTAAGTAAATAAACTTAATAAAATCGGAATATTTACAAATAATGGAGCATATTTTCCCAACTAATCAAGTATAATGAGACTACTTAACCAACAGGGAGGATTCACCATTGGATCAACGTCAGAATGATGTGGATCGTTATTATAGCGATCCGCTTCCGCCACCACCTTATGTAGTACCCAAAACCAATAGCAAGTCTATCGCAGCTCTTGTCCTGGGGATTTTGTCAATCATGATTCCATACTTGGGATTTCTGATTGGGATTGTCGCTATCGTATTCGCATCTATTTCTCTTAAGGAAATCAGGCTTCGCATGGAACAGGGAAGAGGGTTAGCGATTGCCGGTCTCGTCTGTGGCATCATTGGCACGGCGATATATG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA //