Array 1 293696-294059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCV010000002.1 Alkalihalobacillus xiaoxiensis strain DSM 21943 Ga0454017_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 293696 32 100.0 34 ................................ TGGATTGTTGCCCCACAAACCTTTTCTAACTTCC 293762 32 100.0 34 ................................ CTCTGTGGTTAGCATAAATTCTCCACCGTATTCA 293828 32 96.9 34 ...................G............ ACCTCCTGAACATAATATATAACGATGTTTAAAC 293894 32 100.0 34 ................................ ACCGAATAGATGAGTGTTGTCTTTAGATGCTTTA 293960 32 96.9 36 ...............................C CCAATTGACGCCGCGCGCCTCCGTATGATAGAGCTC 294028 32 75.0 0 .C........AC...A....A.TA...A.... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 94.8 35 GTCGCACTCTGTATGGGTGCGTGGATTGAAAT # Left flank : TCCAATTATGCGAGAATTACTCTCTAACTATAAAGACGGAACGATCGTCCTTGGAACACACGGAACAATTATGACCGTGATTCTCCATTATTTCGATTCAAACTATGCATTTGATTTCTGGAAAAGCACAACAAAGCCGGATATATACAAACTCACGTTTAAAGAAGAGCAGCTGGTCGATGTGAGCCGGGTGTGGGAAGCAAGTGAACAGACGAAATTTGTACGTTAAATTTTGTGAGGGAACCATTTTTTGACTAAAACACGTATTTAAGGTTGAATATTCTTAAAAATAATTTGCTAGAATAATAGAAAGTAGTAAAATAAGATATTGGTGAGGACCCGAAGCGAACATAAAAAGCCTAGGAGACCCGCACCAAAAAATGCATTAATTATGTGTAAATGTGTAATAGGGAAGAGAGTTTAGCATTGATTAGTAGCTTGATCTAAATGGTTAAGAGGATAAATGCTAGAGTTTTGGCGTTTTTTGTAGTAAAAACGCT # Right flank : TCCATCGCTACACGAGCTAACATTTACCAATAATAGTTTGATTGGTTTCAGCCGTTTTTGTGGTTTGTTTTAAAAGGGGGAGAGATCGTCATGATCGAATTGCGAAAAGTAAATGAGGACAACATTGAAGAAGTTATTGCACTTGAGGTTGGCGAGGGACAAAAAGAGTTAATAGAAGTGACGAATCTTAGGTGTATTGCCGATGCGTATGTGCTAAACGAAGAGGGGATACCGGCAATTCCATTTGCTATCTATGCAGATGGCGTTGTAGTGGGCTTTTATATGTATACATACGATACGACGGATCATGAGTCGTTTCAAGCGGAAGTGTTTTTTGGGAAGAAGGCTTATTTTATTTATCATTTGATGATTGGAAAGCGTTATCAAGGAAAAGGGTATGGCAAGCTTGCGTTTGAAAAAATCATGGCGGATATTGAAAAGATGCCAAGTGGTGAAGCTGACTATGTAGACCTGTTTTATCATGAAAACAATGCTGTAGC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 305760-306387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCV010000002.1 Alkalihalobacillus xiaoxiensis strain DSM 21943 Ga0454017_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 305760 32 100.0 33 ................................ AGACATAAATTTTGTTAAGAATATAAATAAAGC 305825 32 100.0 33 ................................ CTACCTCTTTGTCGTACCAAAAACTAGTATCAG 305890 32 100.0 33 ................................ TTAAGCCAACTGGTATTCCTATGCTTGATCTCA 305955 32 100.0 33 ................................ TAAAACAAAACACTACGAAGAAACTCCCTAACG 306020 32 96.9 37 .........A...................... ACGGAGCGGTTAAATGCCCGCATTAGTGGTGGTGAAC 306089 32 90.6 34 .........A........T.A........... AGCTCCTTTTTATTTTGGTTTTATGTATGTTCGT 306155 32 90.6 34 .........CC.....A............... AAGTACAGGGAATCATCTCCATTTTGAGATAAGA 306221 32 93.8 37 .........C...........C.......... CCTTTTTGCACGAAGTTTCGAATCAGAAGGTTGAGGG 306290 32 96.9 34 .........A...................... AGAATACGCCTTACTTCCGTTTATCCGAACTTGG 306356 32 68.8 0 .........AC.A.A......ACTTA.A.... | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 93.8 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCAACGATCGACGTCACTTGTCAAACAGGAGCAGACATCGAGATAGAAGAGCGGGCAGGATCAGAAATTACTGAAGCCTGGTATGAAAAACCAATGGCTCCAGCAGGCGTCAAAACCTATAATCCCGCATTCGATGTGACCGATCACACGCTTATTAGCGCCATTATCACTGAACACGGTATCATTCGCCCAGCATATAAAGAAGCAATTGCCGCGCATGTGCATGTGGGGTAAATGGAAAGAAAATTGTTTATTCGATCTATCTCCTTTATCCAAATTCTGTTATCCTTTAGGTAGAGCAGAATTTGGATAAATGTCGTGATGACGCATGGTGCGGATCCTAAGCGAACATAAAATCCCTAGGAGACCCGCACCAAAAAATGAGGTGATTGTGTAACAGTTTGTGAGGTTTTTCTGGATTAGCATTCGTTTTTCGGCTTAGTTGGTAAAATGTATTAGATAAATGTTGTCGTTTCGAGCGGATTGCGGCTTAAATCGCT # Right flank : TTAACATCCTATGTTTTCATCAACACGTGGCTAGAGACAGCCTCGCCTCTTCGTAAAAACTTAATAAAGGTTATTTATTAAGTTGATTATATAAGGTACACTACATGAGAGGGTGTTGTCAGCTATGCCATTTGCTGAATTCATTTGCGGGGAGGGTTTACATGGCTACGGCTTTTCTAGTCATTATTTATCTAGCATTTATTAGTTTAGGGTTGCCTGATTCTCTTTTGGGGACAGCTTGGCCAATTATAAGCAAAGACCTGACGTTGCCACTTAGTGCGGCTGGGGCAATTTCAATGGTTATTGCAGGAGGGACAATTGTTTCTAGTTTGACCAGCCGTTTTCTAATTGAACGATTTGGAACGGGTTTTCTGGCTTTTATCAGCTGTGTTCTTACAGCGGGTGCTTTGCTTGGTTTTGCATTTGCACCTTCGTTGTTGTGGTTTCTGCTTTTGGCTGTTCCATTGGGGTTAGGAGGAGGGGCAGTAGATGTAGCTTTA # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCATTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 321923-323472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCV010000002.1 Alkalihalobacillus xiaoxiensis strain DSM 21943 Ga0454017_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 321923 32 100.0 33 ................................ CTCCACCATTGCTTGTGCTTCGGTTTGTACCTC 321988 32 100.0 37 ................................ GTACCGTTGTCGATGAGTACGGGAATATGGTCCGATA 322057 32 100.0 33 ................................ GAGGACGACCACGCGATTAAGCGCAGTTTCGAG 322122 32 100.0 33 ................................ TATTCGTTTGAGCGTCTTAACTCCCGTTGAACC 322187 32 100.0 34 ................................ GCCTGCTCGCTTTACGCTGACGCCCGGCTCGGTC 322253 32 100.0 35 ................................ TAGCCCTTCTACTCACACCTATATACAAGTAGGAC 322320 32 100.0 35 ................................ CCCATGACTCAGTTGCCTTAAACGACGGTGTTAAC 322387 32 100.0 33 ................................ ATCGTTAACCCTCCTTATTAGAATTTACTTACC 322452 32 100.0 34 ................................ AATAATAAAATTTATTGAGGAGGATTACCTAGAC 322518 32 100.0 33 ................................ TTCACTTTCTGTATCGTTTGACTCATCGTTCGT 322583 32 100.0 34 ................................ TATATGCTCCGCGGTTTGTTTGTTCCATTTTAAT 322649 32 100.0 35 ................................ TTGGGTCTGCATTCGTAGGCGCGGGCTCTGCTAAC 322716 32 100.0 33 ................................ CTAAAAGAGATTGAAACATCACGAGGTGCTATT 322781 32 100.0 35 ................................ TCCGTAATCCGTAAACTCACTTGGCTCTGATCCTT 322848 32 100.0 33 ................................ CCTCCTAATCCATAAGTCGGAGTCACTAATATG 322913 32 100.0 34 ................................ GAAAGACGCGCGAAAGAAATCATTCCTGCCACTG 322979 32 100.0 34 ................................ TATTCCAACAATGGAACCGCACGGATTCAGTCGA 323045 32 100.0 35 ................................ ATTTTTGCACGCTCGTCCCATGTTTTTTCTTGTGC 323112 32 100.0 34 ................................ ATTTTAAGGTTGAGGAAGTAAAGGACGAACTTAG 323178 32 100.0 34 ................................ TATTCCTTTTATTATCACTTCAATCGTTTTCATG 323244 32 100.0 33 ................................ ACTGCTCCTCATGGCTTTGGCCTCATAATCTTT 323309 32 100.0 34 ................................ TATGTCCATATCCATGATGTCTAGCAAGGCTGCT 323375 32 96.9 34 ...........................C.... TTAATTACCAGATTTACTACTCGATTAATAAAGA 323441 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 99.9 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AAAGAGAGCTACACGTTGAAAAAGGAAGATTTATATTACAAAAATCAATTCTCACCTTATGTTGGCAGGAAGATCGGCTGCCGCGTGACGAAAACGATTGTGCGAGGACAAGTTGTTTATACGCTCGGTGAACCCTTTGCAGAAGAACGCAGCGGAAGATTGGTGCAGACAACTTAATGGTTTCTAAGGAACAAGTGCCAAGCAGGTACTTGTTTTTTCTTTGATCGTTTTAAAAATGGCTCAAAGTACAAATCGACCTAAGCTTGTCATCCCCTTGCTCATTCTGCTAGACTAAGAGTGGAATTAATGTAAAATAAAGAATACTTTGCAGGTGCGGACCCCAAGCAAACATAAAAACCCTAGTAGACCCGCACCAAGAATTTTGTCGAATATGAGTAACTGTGTAAAAGGTCGAGTGCTGGGGTAGGGAATTCGCGGTTTAAACGCTTCATTTTGCTCGGTAAGGTGATTTTCAAGCGGCTTTTATGAAGAGATTGGCT # Right flank : TATTTGGGACTCGGTAGCGCACACACAGGCAATGTTTCGCACTCAAATGAATACACGAAATAAAACGAAGATGTTTTACTAATGAGCTGTAAACCAACTATATTTTTTAACAGGACATTATCAAACAAATAAAATACCCAAAAAATAGATTCATAATTCCAATTTATAAATTACTATAAAAAAAGTACAAACTAGGAGTATTCACTATGCCCAAACAACCCTTCTTCCCGCAATTGGAAACAGATCGACTGCGCTTAAGAGCGTTAACGGATGACGATGCGGCATTTATTTTCAAACTGTATAGTAATGAAAAAGTGTGCGCGTATTTGTATGATGAAGAGGTTTATACGTCGATGGATGATGCAAGGGAGTTTATTGAGTGGCATGCTGAGCCTGAGAAGAAAGGGCGGAATCGTTGGGGAATTGAACGAAAGACGGATGGCGTGTTACTTGGGACCTGTGGGTTTGATTCGTGGGATCGCTACAATCAAATTGCGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 206740-208693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCV010000006.1 Alkalihalobacillus xiaoxiensis strain DSM 21943 Ga0454017_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 206740 32 100.0 34 ................................ ATTACCTTCAGATCATGAACATTCCTAAAGACAA 206806 32 100.0 34 ................................ AGCACTAGGATTTCAAGCATCGAAAAAGGATATA 206872 32 100.0 35 ................................ TGATCCCACCAAAGGAATTCCACAATGTCCGCATC 206939 32 100.0 34 ................................ TTTCAAGTCTCTAATATCATTCAAACGTTGATAA 207005 32 100.0 33 ................................ AAGATCTCCGAATTGTTAGGGGTATCAATTAGC 207070 32 100.0 33 ................................ CCGGCTATAACCGGCTGGACGCGCCGAGAAGAC 207135 32 100.0 36 ................................ GTATCCAAGTCAATCGAGTCAAAGGATCGAGAAGTA 207203 32 100.0 34 ................................ ACGCTGAACCATATGTCGCCTTTCATAAGCTCGA 207269 32 100.0 35 ................................ ATCCATTAAGTCGATAAACTCGTCGCCCTCTGTAA 207336 32 100.0 34 ................................ TTTAAATGAATCAATCAAATACCTTGAACGTGCT 207402 32 100.0 35 ................................ GACGCCAAGTCGGTTCATTGCGCCTGCCTGCGATT 207469 32 100.0 35 ................................ GAGGTTTTCAATGTACTCTTTAACCCATTGTTTAA 207536 32 100.0 37 ................................ GTCTAAAGAACCCATCCACTCGGCGCATAGCGACCTC 207605 32 100.0 34 ................................ GCTAAACAAGGAAAGTGAGCGATCCGAAACCTGC 207671 32 100.0 34 ................................ CGCAATACGCATAAACCACATCAAACGCCCACAC 207737 32 100.0 34 ................................ TAGAGGGACATCTTTACTTCGTAAATATTGATAG 207803 32 100.0 35 ................................ GAGTCGTTAATTAGACCGTTGATGACCGCGATGTC 207870 32 100.0 33 ................................ ATCTAGCGCATACGGGATAAATCCAAGACCAAA 207935 32 100.0 34 ................................ TTTGTGCGACCTTGTGCAGCAGTATTTGTATCGT 208001 32 100.0 33 ................................ CTGATCCTCCACTATAGTTTCCGCCAACCTCTG 208066 32 100.0 34 ................................ CGTTTCCCCTCCTATATAGGCAGTATCAATCTTC 208132 32 96.9 36 ...................T............ AAGGAATGACTGCTTGTTTAATGTGGTTGTATAGGA 208200 32 96.9 35 ...........A.................... ATCTTGCGTCATACGCACACCTGTCAAGTCGGCTC 208267 32 100.0 35 ................................ ATATGCTTGTTGTATAGGACCCACTGCTTGCCAAC 208334 32 96.9 34 .............A.................. TATGAATCAAGTAATTGAGCAAGCATATGCAGAC 208400 32 93.8 33 ....G...........A............... ATGAACCACTCTTGGCTTTTGAGAAATGACGTG 208465 32 96.9 33 ...............A................ ACATCTACCATTTGTTTTATCAGAATCAAAATT 208530 32 87.5 34 ........T..C...AT............... TTAATGCTGGATAACAAATAATCAACCGTGTTTA 208596 32 84.4 34 ..........T....AT..G...A........ ATAGATTACGTTTTGAATATATTCATCTTCCGAT 208662 32 84.4 0 ..........A....A..........G..T.G | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 97.9 34 ATCGCACTCTGTATGGGTGCGTGGATTGAAAT # Left flank : CTTCTGAGGAAGGGGGGAAAGGAAATTGGGTTGAGCTTGACAAAGGCGAAGACTTAGAACTTAAACTACCTGACGACTTGAGTACACCAAGAAAAGAGTTGCTTGAAATAACGAAATTAGAACAACCATTTACTAAAGAGATTTCATACCCAAAAGCAGAAACAAAACCAGGTGGAAATTCAGTTAATGACAAAGCATCGCATCAGTGGTTTACTATAAATAGAAATAATGCAAAAAAGGGAAAACAGCAAACATTACCTTCTATTGAAGACGAGGTCAATGGAAAAGAAATGACTAGAAAATTAAAGTAGGTTTTAAACGTTCTTAACTAGTGCGGATCCCAAGTGAACATAAAAACCCTAGAAGACCCGCACCAATAATTATGTCGAATATGAAATAATATGTAATAAGTTAATTGGATATGTCTCGCAAACTGGGGATGAGTAGCTATTTGTTAGCCTTTTTATTCATTTATGTACTGAAACTTAGTGAAATTCGCT # Right flank : GGCTACATTTAGTTGGACAGATTACTTTAGGTCAATTAGGCTAAAATCAATATATTTGAGGAGAATTTATGAAGGTAATCGTGAGCGACTTAACCAGGGAGATATGCTGACTCATTTAAACACGGGATGCCCTCCGTCACCCCTAACATCAGGCAGAAAAATAAGTCTTAGCTAGAATTGAAGGTAACAATTCATTTGGGATTCCCTTAAGGGTGTCCTTTTTATACGGAGTAATAGCTAGAGCTTATAATGATAGAAGTTAATAAAGGATTACGATTAGCATAAGTCTAGTAAAATGACCAATTATACTCTCTTAAAACCCTAAGACTATGTTAAAATTTCCAAGAGATCTACTCCCATTGGTGTAGATAGAATGTATGGCTACATAATTAAATCAGGTTGTGGAAAATTACTGAACAAATACATCAGGGGGGTTATATGAATAGACGAAACGATATTTTAGATGCATGGATCATGATCGAACAGCTGTCGGAAGGTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTGTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //