Array 1 37551-39259 **** Predicted by CRISPRDetect 2.4 *** >NZ_MULC01000012.1 Pseudomonas aeruginosa strain SCH_ABX15 ABX15_contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37551 28 100.0 32 ............................ TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 37611 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 37671 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 37731 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 37791 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 37851 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 37911 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 37972 28 100.0 32 ............................ TCAACGACCGCACAGTTACTCAGTACGTCGAC 38032 28 100.0 32 ............................ AAGCGGCAGGCATCGGGTGCTCAGGCATCTGA 38092 28 100.0 32 ............................ ACTCTGAATGCAGGCGCGAAAGCGCCTCACCC 38152 28 100.0 32 ............................ TCGAAGAAATCACCATCAACGCGTAGGAGAAC 38212 28 100.0 32 ............................ GGTAGTACTGGCCGCGATCACGGTGCCGGACG 38272 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 38332 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 38392 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 38452 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 38512 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 38572 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 38632 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 38692 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 38752 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 38812 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 38872 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 38932 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 38992 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 39052 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 39112 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 39172 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39232 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48403-47775 **** Predicted by CRISPRDetect 2.4 *** >NZ_MULC01000012.1 Pseudomonas aeruginosa strain SCH_ABX15 ABX15_contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48402 28 100.0 32 ............................ GCCACAATTCGTCGAGGACCAGGACCGAACCA 48342 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 48282 28 100.0 32 ............................ AGCAACGTGGCCCAGCTCGCCAACTGATCGAG 48222 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 48162 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 48102 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 48042 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 47982 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 47922 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 47862 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 47802 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //