Array 1 2562042-2562852 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913037.1 Amycolatopsis balhimycina FH 1894 strain DSM 44591 A3CEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 2562042 28 100.0 29 ............................ GCGACGTCGGGCGGGAACGTGACGAGGTC 2562099 28 92.9 33 .............C.........C.... CCTCAACGGTGTGGTGTCGTGGCGGATCATCGG 2562160 28 100.0 33 ............................ CGGGCCGTTGAAGTACGTAGGGCTCGACGGGTC 2562221 28 92.9 33 .........AG................. CAGAGCGTTGAACTCGTCCGAGCCGGGCAGGAT CTG [2562245] 2562285 28 100.0 33 ............................ TATGTAGCGGGATTGCGCGGAGATCCCATCGGG 2562346 28 89.3 31 ...........A......A........G GGACTTGGAGGGGCCCGAATCAGAAACTCCC C [2562351] 2562406 28 85.7 33 .....T.T......A......T...... TATCGCCGGGAGCGAGCAGGTCGCGAGCGTGCA 2562467 28 89.3 32 ....C.........A...A......... CGGCACGAACCCGGTCCGCTCCTATCCGTTGA 2562527 28 75.0 92 .C.T.....A.......T.AA...A... GAAGCGGACGACCAGCTCGGCCGGCAAGCCGAGGTCTTTCCCGTGCACGGGACTGGTCCGGCGATCCTGGGCAACACCAAGAGCATCGACCG 2562647 28 85.7 30 ....C.....T...T.T........... CGACTGGACGTGGAATCCGTTCGGCGTAGG 2562705 28 82.1 29 .C.....G....T....T..A....... CGCCAGAAGAGGTGCGTCGCATGGTTGTA 2562762 28 85.7 35 CG....G........A............ CTGCGTCATCAACACACCAGGACAGGGCGCGTAGT C [2562770] 2562826 27 85.7 0 ...-C......C..........C..... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 13 28 89.6 37 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : CGGGAAAGCATGGTCTCTGCGGAAGCTGCTGGCCGAGGTCGACGCCGGGTGCGTGGCGTTGTGGGTGCGTTGGCGTGGACGCACGGAAGTCGAGATACCCGAGACGGTCGGCTTGGTCGACATTCACGACACCGCGGACTTCCGGCCGACCGAGCGAACGTCCCGACATCGTCCCGTTCCCGGCCTGTCGACCGAGCCGCGCCATCAGGACGGGATGACAGAGCCGCCGTCCAGCGCACTACGCCGGCAAGATCATCCTCTGCTGCCGTCTCCGGCAGAGATCGAAGACGCTCGCACTTCCGCAGGTGGCTTCACCCGCGCGCAACTTGCCGTCTGGGGCGTGGCGTGGCCGCCCCCGAAGGGGTGGAAGAAAGAACTGAACGCCCGTTGGCGCGCAGCCCAGACGAAACAGCCATGAGGAACCTGGCCGCCTGCCATTCACAACGAGGAATAGTGCACGAGCAGCGCCGCAGTCCCCGGCGCGGGCAGCTGATCCCCGT # Right flank : CGGCGGAGAGCGACAATAGCTCTCCGCCGAGCGCACTATCTGAAACTGCGTTCGCCGCGAGTTGGGGTCAAAAGTGAGGTAGCCGTGCGGATGCGCAAGACTGTCCGGGTGTTACCTGACATGGACCGATGGCGGCAACTCATCAGTGAGTACGGGCAGCTACAGCAGCTAACCGGGCACACACCTCAGACACGTGGTCAGCGCTTCAACAACATGATCGCTGAACTCCTACAATGTTGGGGCATCCAGGCCACGGCCAATGTCCGAGCCGCCGGCGAGATCGACGTCGCGTTCGCCATCGACGGCGTCCGCTTCGTCGTCGAGGCCAAGTGGGAGAAGACCAAGGCGGACACCGGACGTATCGCCAAGCTGCAGAAACGCGTCCGGCAGCGCTTGTCCGGCACCTACGGTGTATTCCTCTCCATGTCGGGCTACAGCCCAGAAGCTCTCGACGATATAGCCGACGGCGACCGGCTCGAAGTGCTCCTCCTGAGCATCGA # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2569003-2570470 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913037.1 Amycolatopsis balhimycina FH 1894 strain DSM 44591 A3CEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2569003 28 92.9 33 ....C...................A... CAGCAGCACGCCGGCGATGCTCAGCAGCCGCAG 2569064 28 85.7 33 ...........AT.A.........T... TTCGACCAAGTCGGCAGGCCCGTATGGATCGAA C [2569082] 2569126 28 89.3 32 .......A................A..G CAGGTCGTCGGCACCTCGTCCAGCTCGCCGCT 2569186 26 82.1 33 ..A...TT.....--............. TCACGACATCGACCCGGACACCGGGACGTGGCG 2569245 28 92.9 33 ..T......A.................. GTGCATGCCGTCCTTGCGGCCGGTGTAGTCGCC 2569306 28 96.4 33 ....................T....... CGTGGCAGTGCCGTCGGGGATCGGTGGCGGGAT 2569367 28 85.7 33 ..........T...G..C....C..... GGCGCTCGGCGGGCTGATCGCCCTGCAGCGCGG G [2569377] 2569429 28 96.4 33 .....................T...... CATGGTCAGGTCGGGATGCTTGGTCGAGCGTCC 2569490 26 92.9 34 .............--............. ATTCGTCAACGGCGGCGGCGCAGCGGGGCAGGCC 2569550 28 92.9 33 ..........T...G............. CCGCTTGGACAGCTCGACGGGGTTATTGGCGAC 2569611 28 92.9 33 ..T.....G................... GCCGGTAATGCCACGGGCCAGCGGCTCTTCCCA 2569672 28 92.9 33 A.T......................... CGTCGCGCGGGCGTCCGGTTCGGACACCTGGCT 2569733 28 89.3 32 ..T......A...........T...... CTTCTCGCGCATCACGCGCCCGCCATGGGCTT CGCGC [2569742] 2569798 28 89.3 31 ..T.........T............C.. GCCCTCGATCGCGCCGAGCCCCTTGGTCTTC 2569857 28 89.3 33 .CGA........................ CATGATGTAGGGGACGCCACGGCGGTAGGTGGC 2569918 28 92.9 33 ..G...........T............. CCTCTTCGCCGCCTGTCAGGGCTGCCACTTGCA 2569979 28 85.7 33 ...AG.......T...........A... GTGGAGGCCGGCGCCGCATTCGTCGGTGTCCTC 2570040 28 96.4 33 ........................C... TGCATATCAGGCGTTCACCGTCTCGGCGGCTGT 2570101 27 92.9 33 ...-........A............... CACGCCGCCGAGGAAGCCGGTGATCTTGTTCCA 2570161 28 89.3 33 ..TC.................T...... GCGCTCGCAGCCGATGCCGTCCTCGTACGGGCC 2570222 28 100.0 22 ............................ CACCGACCGACTCAAGGCCGGC Deletion [2570272] 2570272 28 75.0 33 .G.A...T.ATA.C.............. TATCAACGTGCGTGAGGTGCAGCCTGGGGTGTG GGCAG [2570279] 2570338 28 96.4 31 .......T.................... CGTCGAGATCTGGCACGCGCTGCGTGACCCG 2570397 28 96.4 17 .................A.......... GCTGGGCGCGGACCGCA Deletion [2570442] 2570442 28 71.4 0 AC..C.A...GA.............A.T | C [2570461] ========== ====== ====== ====== ============================ ================================== ================== 25 28 90.3 32 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : TGGCGTCGAGAACCGGCTGTAGGGTGCGAATTTCGGCGGGTGCGGTCAGGTGTCCGTCGGGGAGTTTGCCCCAGTCGGGGCGTGTGTGACTTTGGACATATTGGACGTAGCTGCCACGGTTGCTGTCCAGGCGCCAGAGCACACCGTGGGCTTGCCGTTTCGGGGTGTCGGCGGGGACGTCGGGATAGACCGACATCAGGGTCCGATGCATGTCGTGGACGTTGGCGTAGTCGCGGCGGAAGGTGCGCGAATGCACGTTGATAGTGAGTTTGCTCAGGAACACGTGGTGTCTCCGGCGGGGATCATGTTGTCGGTCAGCGGGACTTCGCCGACAAGGACGGTGCGGGTGGCGAAGCGCCGGGCGCCGTGGGCGAAGGAGCGGGGGACGTCGTGGCGTGGTTCAGCACCCACGGTGCCGGTACTTCCGGGACAACCAGCGAACGTCCGACCAAACTGAACAGAAACACTGTTTCTCCTGGTAGATTCACAGGTTAGCAAGT # Right flank : TTTGCGCACGGTCGCCGTGATCCTGACGAATCCGCGCTACACCGGCCGCCAGACCTGGAACCGCCGCGCCACCGACACCAGCGGCCCAGCCGCAACGCCGGCCCTGTCGGCGAAGCCTGCACATCGTGCGCTCGTCACCGAGCAGGACTTCATCGCCGCTCAGCAGATCCGGGCGGCCCGACCAACCACCGACGGCCACGCTCACCGCTTCGCCCTGGCCGGTTTGATCCACTGCGGTGTTTGCGACCGGCGGCTGGACTCGCACTGGAACCATCGGCGTCCGACCTACCGGTGCCGCCACAGTCACACCAGCACCCAACGCGCGGGCCAAGGGCGAGCGAAGACGCTCTACATCCGCGAGGACCACCTCGTCGAGGAGATCAGCATCCGGCTCGGAGATGAAGGCAACGACGGCCATGCCACACCGGAGCTTGACCGAATACGACACAGACGTGTGGCAGCAGCGCTGCGCGACTCAGGAAAGATCATCGTCTGTGACA # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:-0.06, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //