Array 1 791-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWH01000011.1 Campylobacter sp. RM12916 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 790 30 100.0 34 .............................. TCGCCACTCTTTTGCGCCACGTATTGATATATGT 726 30 100.0 37 .............................. GCACGGGTCTTCTAATCTCGTTCATTGTTGCCCTCCT 659 30 100.0 36 .............................. TAGGGCTTGTATGGATTTTGCCCTACAAAAAACTGA 593 30 100.0 35 .............................. TCATCCCATTCTAGGGCTAGAATTTCGCATATCCT 528 30 100.0 34 .............................. TACCAAAATAAAACAAAATAACTTATTTTTTGAA 464 30 100.0 36 .............................. TCGTATCTTACGAGGCAAAAACTGCGGAAAGTCAAA 398 30 100.0 37 .............................. TTCTCATCTTTCGCCTTTATCGCCTTTGCGTCGGTTT 331 30 100.0 34 .............................. ACTACCACGTGCAGGCGGCGTTTTATACCGACGT 267 30 100.0 34 .............................. AGCTGAAGTCGCTTAAATCTCAACGCTATGGTCT 203 30 100.0 35 .............................. TAACCGACGGCAGACAAAAAATAGCTGATGAAGTA 138 30 100.0 38 .............................. TCACTCAAAGCATAAATGCGATAATCGGCGCATTCAAA 70 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 100.0 36 GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Left flank : TGAGATTTATAAGACCGAGCTAGATCCAAGGATCGGCTTTTTACACGAGCCAAACTACCGTGCGCTTAGCTTGCATCTTGATATTGCTGAGATTTTTAAGCCGATTTTGGGCGATACGCTGATCTTTACAATACTAAATCGTCGTGAGATCACGGCAAAGGACTTTGAGACGAACGCCGGACGGATCAAATTTAGCAACGAAGCCGTGCAAAAGATCGAGATAAAGATAATCGGCAAGCTCACCGAGCAAGTAGAAATAGCGGGGCAAAAGCTCACGTGGAGGCAGGTGATCCGCCGAGAAGCCAATAGACTTAAAAAGTGTATTTGTGAGGACGCGCCTTATGAGGGGTTTGTATGGAGATAAAGCTTGTTTTAAGCTTTATGATGACCCGATATTTTGGGCACTTGGCTGTTTGATGTGAGTAAAATTTAGCCTTTTATAAGGTAAATAGATATAGACTTTATCTTGCAAACAGCCCTAAAATGTGTGTTTTGGTGCT # Right flank : CATGGATTTGGGGAAAGAAATGCTTAACCAAGACACTAGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 76787-74604 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWH01000009.1 Campylobacter sp. RM12916 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 76786 30 100.0 37 .............................. CCCTGCATGGTTACCGATTTTTTTGGCTAATCCCAGT 76719 30 100.0 35 .............................. CCACCATAAGTCTTTGTTTCAGTGCTACCGTTGGT 76654 30 100.0 35 .............................. GCCAAAGCGAACTTTACAGCATTAAGGGTATAAAA 76589 30 100.0 36 .............................. GCGGTCGTAACCGCACTATTTGTAGTCCAAATCTTG 76523 30 100.0 36 .............................. GGCGCACTTGCCCTTTGTCGGTTTGCGGCACTTTAA 76457 30 100.0 35 .............................. ACCAAATACGGACAGCGTTTTATGGAGCTTAAAAA 76392 30 100.0 35 .............................. AAGTCAATACCCTCCCTATAAAAGCCCTTTTCACG 76327 30 100.0 35 .............................. TTTATCGTTTATCGGGATGAAGCAAAATTTATTTT 76262 30 100.0 34 .............................. TATAAACAGGGTAGAGGTGTCGCAAAATGCGATA 76198 30 100.0 36 .............................. GCGCTTAGTTTTGATCCTCTTATACTGGAAGAAAGA 76132 30 100.0 36 .............................. ATCCAAAAGGAGAAAATATGGATAAATCCAAACAAC 76066 30 100.0 35 .............................. CATTGTCTATGTCTGGTGGTGTTTTAAAAAATATC 76001 30 100.0 35 .............................. CCGCTATGGTGTATCTGCTTTAACAAGAAGCGTTT 75936 30 100.0 36 .............................. TGAATTTACTTGAGGGTTTGAATATAGACTACGATC 75870 30 100.0 37 .............................. TGTTCTGGGGCGAAAGCAAGGGGCTAAATACGACCTT 75803 30 100.0 35 .............................. TTGGAATGGATAAAAAGCCAATTCCAGTGCTTAAA 75738 30 100.0 34 .............................. GCTCCTGCTCTAACTCGGTAATGCGCTTTTCAAG 75674 30 100.0 36 .............................. AAACCTCACTATAAGCAACGTTGTAAGTAAGGTCTT 75608 30 100.0 37 .............................. AGATACATTCAGCGCTCAAGCCTGCAAATGCCGCCGT 75541 30 100.0 35 .............................. TCTGCATCAATTCTCTCCTAGTTGTATCTATTTTT 75476 30 100.0 34 .............................. AAATATGTATGTTGTATGTAGCTATCTTTTTTAC 75412 30 100.0 34 .............................. TCGCACCGCCGCCACTAAGCACCGCTGCCGTAGC 75348 30 100.0 36 .............................. ACGCTATCTAATTTCTTTATAGCATCATAGGTCTCT 75282 30 100.0 34 .............................. GAAGCTAATGCCCTATTCTAGGCACTTTGACATA 75218 30 100.0 36 .............................. TACAAAGCAAATTTTAACGCCGCTCCAAAAGTGCAA 75152 30 100.0 34 .............................. GCTTTTTATGCAGCTGGCAATGGCGTAGCCGTTG 75088 30 100.0 35 .............................. TGAAAAGCTAGAAAAAGATATTGAAGCGGAAACTA 75023 30 100.0 34 .............................. GCTTTTTATGCAGCTGGCAATGGCGTAGCCGTTG 74959 30 100.0 35 .............................. GCTTTTATCTCTTCGAGCGTAGGCTCTTTAGCTTC 74894 30 100.0 34 .............................. TATCAAAGACAAGAGCTGTGAAGGCGAATTAAGG 74830 30 100.0 36 .............................. ATAAGCATATTTACAGATGTTTCGGTTTGCTTCATA 74764 30 100.0 35 .............................. GCTTTTATCTCTTCGAGCGTAGGCTCTTTAGCTTC 74699 30 100.0 36 .............................. GAGCTTATGGAGCTGGTGCAAAGCTAAATATAACAG 74633 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.8 35 GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Left flank : | # Right flank : GAAATGAATGAAGGTAGGTAAGGTTGGAATTTGTTTTAAACGTAAAGGAGAAAGAAAATGCAAGACGTAAAACAACTCAAAGCTATGCTTGATAGATATGAAGCCTTGGCTAAAAAGATCACTAATGCAAAAGCTACACTAGTAGATCTTGAGAGTGAGATGGTAAAACTTGAAGAGAAAATAGGACCGATATTGTTAGTGGCGAGTCGAGTTAATGGCTTTAATTATTTTACGAAGCCTTAATTTGCCTTATTGTGTAAGATGAGCATAAAAAAGTTATTAATAGTTAGTTGTGCCCGCTCTTTTGTATCTTAATAAAGTTGCATGACTGTTATGGTGGCTAGTGGGTGATAAATGTGACATAAAGACAAAGAATGACAAATAAATCCCGGAGAGCTGTAGCTAAAACATGAGCTGCACACAAAAACGCATGACAGTTGAGACAATTACTTAAATACTTATCTTTTAAGTTATGGTAATTTAACCAAAATGTTAGTTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTAAGCCGTTGGCTTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //