Array 1 14091-14258 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832137.1 Neisseria sp. HMSC066F04 Scaffold94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14091 36 75.0 30 T.GAATAGC.T......................... GTCTTCCAGCAAGATACGTAGCCAGTCCGC 14157 36 100.0 30 .................................... TCGCTCCGCGTTTGATGATCAGCTTATAAG 14223 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 88.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATCACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGAAAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCAATGGGTTTGTTCAGTACAGTCTGAACCGTTTTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAAGTAGAATACAAGTATGTGCCTAGGTAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGTTTGGGTATTAAGTGGGTGGTTTGCCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCTTGTTCACGCGGATAGGAGCAACGGCTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGTCGGTTTGAGCTTCAATTTATGGGACGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCTAAAAGATTGGCGACGTCATTTATTGTTGTTGTAGCTCCC # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 14416-14715 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832137.1 Neisseria sp. HMSC066F04 Scaffold94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14416 36 97.2 30 ...T................................ AAAGTAGAATACAAGTATGTGCCTAGGTAG 14482 36 100.0 30 .................................... TGTTTGGGTATTAAGTGGGTGGTTTGCCCA 14548 36 100.0 30 .................................... CCTTGTTCACGCGGATAGGAGCAACGGCTA 14614 36 100.0 30 .................................... TGTCGGTTTGAGCTTCAATTTATGGGACGT 14680 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGAAAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTATTTGAATAGCCTCTTTCTCATTTCGCAGTGCTACAATGTCTTCCAGCAAGATACGTAGCCAGTCCGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCTCCGCGTTTGATGATCAGCTTATAAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCAATGGGTTTGTTCAGTACAGTCTGAACC # Right flank : TCCTAAAAGATTGGCGACGTCATTTATTGTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCGGTAACTATCTGAAGTGTACTCATCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTAATACTCCTATAAGTTTTAGTAAATTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAATGCGCGCCGGCAAATGCAAACACGTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 3 15197-15430 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832137.1 Neisseria sp. HMSC066F04 Scaffold94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15197 36 86.1 30 NNNNN............................... ACCGTTACCTCGAAACGCCGTGCGTTTCCG 15263 36 100.0 30 .................................... CCCCTTTGTAATAGCTACAGTAAGCCTCGA 15329 36 100.0 30 .................................... CAGGTGCGAAGGTCTTTGAATCCTGCCGTA 15395 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CATTTCGCAGTGCTACAATCCTAAAAGATTGGCGACGTCATTTATTGTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCGGTAACTATCTGAAGTGTACTCATCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTAATACTCCTATAAGTTTTAGTAAATTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAATGCGCGCCGGCAAATGCAAACACGTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCGGTTTTATTTTGGGGCATTGGGGATAACGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACTTTGCCCAGTCTATATTGTGTGCAACGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACCTCAACGGGAAATCCTTATTTTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGAGCTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTTAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 15524-15691 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832137.1 Neisseria sp. HMSC066F04 Scaffold94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15524 36 91.7 30 NNN................................. GCGGTTTTATTTTGGGGCATTGGGGATAAC 15590 36 100.0 30 .................................... ACTTTGCCCAGTCTATATTGTGTGCAACGG 15656 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTCGCAGTGCTACAATAATGCGCGCCGGCAAATGCAAACACGTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATACCGTTACCTCGAAACGCCGTGCGTTTCCGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCCCTTTGTAATAGCTACAGTAAGCCTCGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAGGTGCGAAGGTCTTTGAATCCTGCCGTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACCTCAACGGGAAATCCTTATTTTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGAGCTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTTAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTTGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACAATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCATTTTTGTCAGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 251570-251073 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 251569 33 97.0 34 T................................ CTTCTAAGACTGTGGCGTTTACGGAAAAATCGAG 251502 33 100.0 34 ................................. CACCCGGAACTCAGAGCAATATTAAGTCAAAACA 251435 33 97.0 32 A................................ ATCTTCATGATATGAAATAGCGTCATTAACAA 251370 33 100.0 33 ................................. AATCCTTATAAAGCCAAAAAGACCGAAACAGCA 251304 33 93.9 32 G............A................... ATGAATCCGATCAGGATTGAACCTAAACCAAT 251239 33 93.9 34 A............A................... AAATACGCCGTCCCTGCGAACTGGGTAGGACGCA 251172 33 97.0 33 .............A................... CCATCTGCATTGATAATACAGCTAGTAATTTAT 251106 33 97.0 0 G................................ | C [251092] ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGA # Right flank : CCTGCGTTGATGATACTCAGGAAAGACATTGTCGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATATATTTCCTTTCGGAGAGAAAACATGTCAGATGACCAGCCGTCTTCGGGTAGCTGTGTGTTGAAACTCTGCCACCGTATCTCATGTCTGAGTAAGGAAGAGGGGCTGTATGTTCGGATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGGAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTATATTTACATATTAAATTTAATATCATATTATCATTGCATGATAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 252097-251796 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 252096 33 100.0 33 ................................. TACCGTTATCGATTGCGCCCATTCCGCGCTGAA 252030 33 97.0 33 A................................ ATCCGACACATCACCCGCCCCGGAATTATTATC 251964 33 97.0 35 C................................ ACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGG 251896 33 93.9 35 C....T........................... TTTGACAATCGTGCCACATGTAGGGTTAATTGCCA 251828 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.6 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCTCAATACCCCGATTTTTGCGACATCCGCCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACCACCGCTATTGGGTATTGGACAATCCCTACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGCCGCGCTTGTCGGTCAGGCTTATGCTGATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATATCGTATTTGGCGCGTCGCCACTTCAC # Right flank : AATAATCCCCAAACAATCCAACATCATTTAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTCTAAGACTGTGGCGTTTACGGAAAAATCGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACCCGGAACTCAGAGCAATATTAAGTCAAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCTTCATGATATGAAATAGCGTCATTAACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCCTTATAAAGCCAAAAAGACCGAAACAGCAGCCAGCCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 252425-252260 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 252424 33 97.0 32 T................................ GACCACCGCTATTGGGTATTGGACAATCCCTA 252359 33 97.0 34 C................................ AAAGCCGCGCTTGTCGGTCAGGCTTATGCTGATG 252292 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTATGCCCTACCCGTAGCGTTCGGTGGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCCGTTGTCGCATCGGGAATATGCCGGTAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCTCAATACCCCGATTTTTGCGACATCCGCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATATCGTATTTGGCGCGTCGCCACTTCACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATAAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 252883-252652 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 252882 33 93.9 33 NN............................... TCGTATGCCCTACCCGTAGCGTTCGGTGGATGG 252816 33 100.0 34 ................................. ATTTCCCCCCTACCTTTAAAAACTTAACTAAATC 252749 33 100.0 32 ................................. CAGCCGTTGTCGCATCGGGAATATGCCGGTAA 252684 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.7 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACCAGTATGTTGGAGGAGGACAACATCTTTGAGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATAATACCGGCTGTTTCTTTTGGCCCACCATATCCAGCCGCCTTCGGGCGGCTGTGTATTGAAACTAAGATAGTCGGTTCGTCATTTTTTTCTACCAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTCGTCGTTTGGAAGAAACATTGGCCGGCATGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGGTATTGCGCCAGTACCTGACGGACGAGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCTCAATACCCCGATTTTTGCGACATCCGCCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGACCACCGCTATTGGGTATTGGACAATCCCTACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGCCGCGCTTGTCGGTCAGGCTTATGCTGATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 5 253477-253045 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 253476 33 93.9 35 NN............................... TAAATAATCATTGTTTTTACTAAGTATTTTTTTGG 253408 33 100.0 33 ................................. CAGTATGTTGGAGGAGGACAACATCTTTGAGCT 253342 33 97.0 34 T................................ CCATAATACCGGCTGTTTCTTTTGGCCCACCATA 253275 33 93.9 33 T........................A....... TAAGATAGTCGGTTCGTCATTTTTTTCTACCAA 253209 33 100.0 34 ................................. TGTCGTCGTTTGGAAGAAACATTGGCCGGCATGA 253142 33 100.0 32 ................................. AAGGTATTGCGCCAGTACCTGACGGACGAGGA 253077 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= =================================== ================== 7 33 97.4 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACTTCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGTTTGAAGCCTTTGACGACTGCCGGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTATGCCCTACCCGTAGCGTTCGGTGGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCCGTTGTCGCATCGGGAATATGCCGGTAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 6 253803-253635 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 253802 33 100.0 34 ................................. ACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTT 253735 33 97.0 35 T................................ AACGAATTATCGAAGAAGTATGGTACGAATTTGGA 253667 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= =================================== ================== 3 33 98.0 35 NCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGGTGAAACTTTTGAGGACTACCAAGACGTTTACAGTCTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGTTCTTGCCTCAAGCTCAAAAGCAGAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATAAATAAGAGCAAGTGCCAGTGCGGCGTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGGTTTGAAGCCTTTGACGACTGCCGGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAATAATCATTGTTTTTACTAAGTATTTTTTTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTATGTTGGAGGAGGACAACATCTTTGAGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATAATACCGGCTGTTTCTTTTGGCCCACCATATCCAGCCGCCTTCGGGCGGCTGTGTATTGAAACTAAGATAGTCGGTTCGTCATTTTTTTCTACCAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTCGTCGTTTGGAAGAAACATTGGCCGGCATGACCCAGCCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 254264-253902 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 254263 33 97.0 33 ..........................G...... TTTTGAGGACTACCAAGACGTTTACAGTCTTTT 254197 33 100.0 33 ................................. TCAAAATTGTATCTTTCCCCATTTTCTCAACCT 254131 33 100.0 33 ................................. AACGTTCTTGCCTCAAGCTCAAAAGCAGAAGAC 254065 33 97.0 32 G................................ CATAAATAAGAGCAAGTGCCAGTGCGGCGTTG 254000 33 100.0 33 ................................. TTCACAAAACTCAACCCCTCGCGCTCCAACTTG 253934 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ================================= ================== 6 33 98.5 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGTTTCGTTCGCATGTTCTTTCGCCTTTGCCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTGTGAACAACGCTGTTAAATCGCCGTTCACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGTTTGAAGCCTTTGACGACTGCCGGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAATAATCATTGTTTTTACTAAGTATTTTTTTGGCCCAGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 254727-254494 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 254726 33 93.9 34 NN............................... TATGTTTCGTTCGCATGTTCTTTCGCCTTTGCCG 254659 33 100.0 34 ................................. TTGTTTCAGACGCAGTTGTGACCAGTCTTTACCG 254592 33 97.0 33 G................................ AGCTGTGAACAACGCTGTTAAATCGCCGTTCAC 254526 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCACTGGTGGGCAGGTGTCAGCGGCTTGGATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGATGACTTCGAGGTCGCCATCACTAAAACCTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGGTGAAACTTTTGAGGACTACCAAGACGTTTACAGTCTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGTTCTTGCCTCAAGCTCAAAAGCAGAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATAAATAAGAGCAAGTGCCAGTGCGGCGTTGCCCAGCC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 9 255054-254888 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 255053 33 100.0 33 ................................. GGCACTGGTGGGCAGGTGTCAGCGGCTTGGATG 254987 33 97.0 34 G................................ TCGATGACTTCGAGGTCGCCATCACTAAAACCTA 254920 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 NCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTGTTGAAACTGCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGATTCGTGCATCACAAAATTCGATAGGAGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGACTTGGCAATCGAGTAATGGGCGATCGGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATGTTTCGTTCGCATGTTCTTTCGCCTTTGCCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTGTGAACAACGCTGTTAAATCGCCGTTCACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 255383-255218 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 255382 33 90.9 33 NNN.............................. CTTGATTCGTGCATCACAAAATTCGATAGGAGG 255316 33 97.0 33 C................................ CTGACTTGGCAATCGAGTAATGGGCGATCGGGT 255250 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 96.0 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAGGCGAAGCCACAACCGCCGGCGGGCAGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCACTGGTGGGCAGGTGTCAGCGGCTTGGATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGATGACTTCGAGGTCGCCATCACTAAAACCTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGC # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 11 255706-255540 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 255705 34 97.1 32 .................................C ATCAGGCGAAGCCACAACCGCCGGCGGGCAGC 255639 34 100.0 32 .................................. GTTGGCTATACGCTCTGCGGCCGCCTTTTGCT 255573 34 97.1 0 T................................. | ========== ====== ====== ====== ================================== ================================ ================== 3 34 98.1 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Left flank : CAAACCAGCAAATCGGCGGCGTGCCGGTTACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCAAAACAAACCCAAGAGCCGCCGGAAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGAGTTTGATTTTATTTAGGCGTTGGCTCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTTAACGGCCTCGAATCCAGCGCCACCGAAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAGTGTTTTAACGTTTTCAGTCTAGTTTCGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTG # Right flank : GCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGATTCGTGCATCACAAAATTCGATAGGAGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGACTTGGCAATCGAGTAATGGGCGATCGGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 256300-255935 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 256299 33 97.0 33 A................................ CACTCTGGCAAGTCGCCCACATCCTGCCCCACG 256233 33 93.9 34 A...........................C.... CAGCAAATCGGCGGCGTGCCGGTTACTCTTTATC 256166 33 97.0 33 G................................ TACGCAAAACAAACCCAAGAGCCGCCGGAAATA 256100 33 100.0 33 ................................. TTTTGAGTTTGATTTTATTTAGGCGTTGGCTCT 256034 33 97.0 34 T................................ ACATTTAACGGCCTCGAATCCAGCGCCACCGAAG 255967 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.5 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAAACCATCAAGATAGCGTAAGCAGACGGTGGGATATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTTTTCAGCCTTTGCCAAGGCCGCTTTCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTGCTTTTCTTACTTGTACAAAATCACCAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATTCACCGATTCGTTCATTGAATGGTAAACTCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAAAATCCTCAGATACATTTGTGAAACCGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATGGTTGACTAGATATAACGCAAGTTAT # Right flank : TCAAAGTGTTTTAACGTTTTCAGTCTAGTTTCGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAGGCGAAGCCACAACCGCCGGCGGGCAGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 256890-256524 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 256889 33 93.9 34 NN............................... CTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTC 256822 33 100.0 33 ................................. CATCAAGATAGCGTAAGCAGACGGTGGGATATC 256756 33 100.0 33 ................................. TGCTTTTCAGCCTTTGCCAAGGCCGCTTTCAAG 256690 33 97.0 34 A................................ TGCTGCTTTTCTTACTTGTACAAAATCACCAATT 256623 33 97.0 34 C................................ TAATTCACCGATTCGTTCATTGAATGGTAAACTC 256556 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.5 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGATGACAGGCGGAAGTCCTGCTGTTGGCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTAAAATCCTCAGATACATTTGTGAAACCGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATGGTTGACTAGATATAACGCAAGTTATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTCAAACCAGCAAATCGGCGGCGTGCCGGTTACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCAAAACAAACCCAAGAGCCGCCGGAAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGAGTTTGATTTTATTTAGGCGTTGGCTCTTCCAGCCGCCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 14 257282-257052 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 257281 33 100.0 32 ................................. CGAGTATGGCAACAGTATTATCCGGATGGTTT 257216 33 100.0 32 ................................. GGATTGGCCCTACATACCGGAGCATTAATTTG 257151 33 97.0 34 G................................ TGCCGATGACAGGCGGAAGTCCTGCTGTTGGCAT 257084 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 99.2 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCTGCCGTCCGTATAATTCGATTCAACAGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCGCCATCGTAGTACACCGTCAAGGTGTTGCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCTTCATTGCCGGATTGATGGCGAGGATGAGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGGCGTGTTGATTTGGATGGCTTTATTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAAGATAGCGTAAGCAGACGGTGGGATATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTTTTCAGCCTTTGCCAAGGCCGCTTTCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTGCTTTTCTTACTTGTACAAAATCACCAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATTCACCGATTCGTTCATTGAATGGTAAACTCTCCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 15 257741-257445 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 257740 33 93.9 33 NN............................... CCCTGCCGTCCGTATAATTCGATTCAACAGTTA 257674 33 100.0 33 ................................. CCCGCCATCGTAGTACACCGTCAAGGTGTTGCT 257608 33 97.0 33 G................................ GTCTTCATTGCCGGATTGATGGCGAGGATGAGG 257542 33 100.0 32 ................................. TTCGGGCGTGTTGATTTGGATGGCTTTATTGG 257477 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ================================= ================== 5 33 97.6 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACCAGTCCATCCGCAGAGGGGATTGGTGCAGCGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGTTATTGAGCCTAGTAAAGACAAGCTTGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGCGACCCATTCGACAAAACCAATCGCCAACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGATGACAGGCGGAAGTCCTGCTGTTGGCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 16 258004-257836 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 258003 35 100.0 32 ................................... CGTTATTGAGCCTAGTAAAGACAAGCTTGGAG 257936 35 94.3 31 .................................TT GCGACCCATTCGACAAAACCAATCGCCAACA 257870 35 91.4 0 ................................NNN | ========== ====== ====== ====== =================================== ================================ ================== 3 35 95.2 32 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA # Left flank : GTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGGCTGGAAGACGTCTATCTCTCCGGTTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTCCATCCGCAGAGGGGATTGGTGCAGCGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCTGCCGTCCGTATAATTCGATTCAACAGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCGCCATCGTAGTACACCGTCAAGGTGTTGCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCTTCATTGCCGGATTGATGGCGAGGATGAGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGGCGTGTTGATTTGGATGGCTTTATTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 17 258399-258168 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 258398 33 90.9 34 NNN.............................. CTTGTGATTGTTGAGTAATGACAGCCGGAAAGAC 258331 33 100.0 32 ................................. CATGGCTGGAAGACGTCTATCTCTCCGGTTCG 258266 33 100.0 33 ................................. CAGTCCATCCGCAGAGGGGATTGGTGCAGCGCA 258200 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAATTCGGCCTTGCAGACGCCAGGCAATGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATACTGCGTCAATGTCTTTTTTATTTGGTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTTGGTATTAAGTTATTTAATAGGAAATATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGTTATTGAGCCTAGTAAAGACAAGCTTGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGCGACCCATTCGACAAAACCAATCGCCAACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCTGCCGTCCGTATAATTCGATTCAACAGTTAACCAGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 18 258726-258496 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 258725 33 100.0 32 ................................. CAAAATTCGGCCTTGCAGACGCCAGGCAATGG 258660 33 97.0 33 C................................ CCATACTGCGTCAATGTCTTTTTTATTTGGTTT 258594 33 97.0 33 A................................ TATTTGGTATTAAGTTATTTAATAGGAAATATA 258528 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 98.5 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGAATCAGGGTCAACAAGGTTATCAACCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTCAAACCAGCAAATCGGCGGCGTGCCGGTTACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAGCAAGACACGCTTGCAAGGGAAATGACAATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCAAGAGTTCAAGCCGAAACGCCGACAGTTGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGGCTGGAAGACGTCTATCTCTCCGGTTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTCCATCCGCAGAGGGGATTGGTGCAGCGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 19 259185-258954 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 259184 33 93.9 33 NN............................... ATAGAATCAGGGTCAACAAGGTTATCAACCGCC 259118 33 93.9 34 C...........................C.... CAGCAAATCGGCGGCGTGCCGGTTACTCTTTATC 259051 33 97.0 32 G................................ TAGCAAGACACGCTTGCAAGGGAAATGACAAT 258986 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AGATTAGGCTTGCGAAACCTGATGTAGCAAGGCTTTTGAGAGAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGGGTGTTGAAACCATTTGATGACGCGAGTTTCCGTCTTGTAGTTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGTCTCCGCCGCGTTGGCGGTAGGCAATGGCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTTACTGCACGGTACAAATTAACATCCGGTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCCAAGAGTTCAAGCCGAAACGCCGACAGTTGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAATTCGGCCTTGCAGACGCCAGGCAATGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATACTGCGTCAATGTCTTTTTTATTTGGTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTTGGTATTAAGTTATTTAATAGGAAATATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 20 259511-259281 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832169.1 Neisseria sp. HMSC066F04 Scaffold492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 259510 33 90.9 33 NN....................G.......... CATTTGATGACGCGAGTTTCCGTCTTGTAGTTT 259444 33 97.0 33 T................................ AATGTCTCCGCCGCGTTGGCGGTAGGCAATGGC 259378 33 100.0 32 ................................. AGTTACTGCACGGTACAAATTAACATCCGGTT 259313 33 90.9 0 C..............................NN | ========== ====== ====== ====== ================================= ================================= ================== 4 33 94.7 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTCGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGACGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTTGTTCTCATGAAAATGTGGCAGGATTAGCGAATTAGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGGTATAACAGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGAGAGTTTAGCGAGATTAGGCTTGCGAAACCTGATGTAGCAAGGCTTTTGAGAGAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGAATCAGGGTCAACAAGGTTATCAACCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTCAAACCAGCAAATCGGCGGCGTGCCGGTTACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAGCAAGACACGCTTGCAAGGGAAATGACAATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCAAGAGTTCAAGCCGAAACGCCGACAGTTGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCT # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //