Array 1 608670-607147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTGN01000001.1 Robinsoniella peoriensis strain WT Contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 608669 30 100.0 33 .............................. TTAGAACAAGGTTTGCACGTGGTTGTTACCGTC 608606 30 100.0 35 .............................. ATAAACAACTTTATCGCACCCTCAACTTTATGCAC 608541 30 100.0 34 .............................. TTCAGTTCCTTAACATCTAATGCGGCTATGTTTT 608477 30 100.0 34 .............................. AACGGAATACAAAACGGAAATATCTCCGTAAGAT 608413 30 100.0 37 .............................. GAAATCAGCTATGATGATGAGCAGGATGCGGAAATCA 608346 30 100.0 36 .............................. ACGATCCCATAACCACTGAACTTAGAATGCTGCACC 608280 30 100.0 34 .............................. CACTCGGATAATTCCGAAATGGCATGAAAGCTAT 608216 30 100.0 35 .............................. AACCGACTGCATGATCGCCATATAATCCGGTTGTT 608151 30 100.0 34 .............................. ATTTATTGGTTAATGACAGGAAAAGAAGAAAATA 608087 30 100.0 33 .............................. CGTCATCGATAAACGCGGTTTCAAGCAGGTAGT 608024 30 100.0 34 .............................. TTCCATCAACCACAGCAGCCTTAATGCCTTGCGT 607960 30 100.0 34 .............................. TGAAAGGAAAGGTGAACTAAATGGCGCTTGGTGG 607896 30 100.0 35 .............................. AGAGAGGCTTTGGCTTTGATGTCATTTACTTGTTT 607831 30 100.0 36 .............................. GCAGATCGGATCGGATATCTTCATAGTCCGTGCAGC 607765 30 100.0 37 .............................. TAAAGCTGGTCATATTTTTCCACTGCGTCATGGTTGC 607698 30 100.0 36 .............................. TAAACTTTCTTAACATATTTATTATTTACAGAAGAT 607632 30 100.0 35 .............................. GGCGTTGGCTTTAAGTTAGTCGCTGGCGGTTCTGG 607567 30 100.0 35 .............................. TTTGTTTTTTTGTATGCTGATAGCCACGATGTAGC 607502 30 100.0 35 .............................. GCAAATCTGGCCACAGGTCTTGTATTTTGTCGAAG 607437 30 100.0 36 .............................. ATGTATGTTTGCATCCACAATCCGCCCGCATTTGGG 607371 30 100.0 34 .............................. CTATCCCCCAGATTACAACGCCTATAACTGCAGG 607307 30 100.0 38 .............................. GAATATCAGAAGCAGGAGCATTATCTATCAAGATGAAA 607239 30 86.7 33 ..............C...T.A....A.... AGTTCTTCTACAGTTTTAACAATTCTGTTTCAA 607176 30 70.0 0 .....C.CA.......AT..A.CC.A.... | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.2 35 GATTAATAGTAATATAGGATGTATTGAAAC # Left flank : AGGCAGGGCTAGGTGTAGGCAGTTAGGAAGCAGTATATGAACTGAAATTTCAGGTGAACATGTATGGCTTTCGCCCAAACCGGAGCTTCTATGTGGCAGTGAAAGAGATGTGCATCAGCATGGTACGAAAACGCATCAATTATGTAGTAGATGCAGATATCCAAGGATACTTTGAGCATATAAGCCATGAGTAGACACTTAAAATTGGTGGATATTATATCCATTACCCATACTTTGTCTGATGAAGAAGTAAGGAGGGAGTGTTGGAATATGGAAAGTACCAGACAAATGAAGCAGGACCAGCACAGGGTAACATTATCTAGAGCAATTTACCAGGCGGTAAAATCGAGAACGTTTAAATTCATTGTATTTTCAACGAAAATAAGGTATTTGTATTAGATTTTGTAAAATTCGATGTCGGCTGGGAAAAAATAAGAAAATCCTTGATTTTATAGGGGAATTGGGATATAGTGGGAAGGAAGAATGTTGAATATTGGTTG # Right flank : TTCTTCGTATATATACTAATAACTACTAGCAACCAAATAATTAATCATAAAATCATCCACCAATGTAAAATCACAATTAAAAAGAAAAAATGAATTGACGTCTCCCCAATTTTATGGTATAAATAACAAGTCGGTAATTTTACAGAGGGGATTGGTCAAGTGGTATGACAGAAGTCTCCAAAACTTTTAGTGGGAGTTCGATTCTCTCATCCCCTGCTATTACAGAACAAAAATAATCAACCGGAAGGTTGGTTATTTTTTTGTCTAAAAACGAAAATGTGTAAGAGGATGGCAATGTGTGGAAAAGTAAACTTTGTCAACATTTATCGAAAAGCACTGCAAAATCCAATATATTTCTGTAATATTAAATCTGGAATATATGGAACGGATATTGTATAATATTCAAACTGGTGTTTTGCCAGGGAAACGAAAGGAAATTTATAAAGGGGGATTCATTTTTTCATGGAAAGAGATATGACGGTTGGAAGACCGGCGAAGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGTAATATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 244584-243969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTGN01000012.1 Robinsoniella peoriensis strain WT Contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 244583 30 100.0 34 .............................. TCCTCTTCCCCCAGCTCCCTGATCCAGCTGTCTA 244519 30 100.0 36 .............................. TCAAGTTTATTAACCCGGTCAAATCCCATTAAAGAT 244453 30 100.0 35 .............................. AACCTTTTCTGCAAGGGTTATTAATTTCCTATCCT 244388 30 100.0 34 .............................. AATTTGTTATGCTGCAAGTTCCGATCGGAACAGC 244324 30 100.0 35 .............................. TTAGTGGATAGTCCTTTCCCCGTAACCTTATCCAC 244259 30 100.0 35 .............................. TATACTCATTTCCTCCCTTAATTGAAAAGTTATCG 244194 30 100.0 35 .............................. TTGTCTATTAATACACCATGATTTCCTAAATGTCT 244129 30 100.0 36 .............................. TTCGTTATATCCTTATAAGTGCAGGAATAGAGGATT 244063 30 96.7 35 .......T...................... TACTTTTTTCGAGATATGTCTTGCTTATTCAAATT 243998 30 93.3 0 .........................CT... | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.0 35 GATTAATAGTAATATGGGATATATTGAAAC # Left flank : ATGATCAATCCATGGAAATTAAAAAAGCAACTGATTAATACAGATATATGCAGAAATTGTTTCAATAAAAAATATGGACTTAATTTGCAAAAAGAAGACATTCTTTATAGCTATTATGCTGCGAAATGTAGTGAATGCAATGCTCTTAAACATACAGTAAAAGGCTTTAGAGTTAAAGGAATGATAAAGATATTGTGTTGTAAAAGAGGTTTCGTCAAGAAATCATATTAGGGAAGGATTATTTTAGACGGTACAGGTATTAATCAATGGTTTATAAAAGGTCTACTTTTAATTATAAAATTATTGGTACAGAAAAAGTCATTTTAAATTTACCAGGCGTAAAATTGGAAAAAGAGCTGGATTGCTTGAAAATCGTGGGAAAATTGGTATTACGTGATAAAATTAGGAAAAAATAAAGTGGCTGGTAAATAATGTAAAAAGGCTTGATTTTATGGGGGTTTTGAGGTATAGTGGGAAGAAAGAATGGTGGAAAAACGTTG # Right flank : CAATCACTCCTTAACCGATCAAGCATCTATACCTATAAAATTATCAGTAATTTTACAATTCTATCAGTAATTTGTGCATAATATACTCGAACACAGATATAGAAAGGAATAATTAACCAGAGACGATATCAATCAAAAAATTAATCCTAATTGTTTTTGGTTACTCCTTGACAAATGACCAAGAAATGGTTAGAATAACAGTTAGTCGATATGACAAAAACTGTGATGAGGAGTATTAAGAGTACTTGCGTTTCAGAGAGCTGCCGGATGGTGCGAGGCAGTAACGAAAAAACTCCCAACTCGCCTCGGAGTTCCTTGATTGAATTTAGTAGATTAAGGCGGGAATTCCCGTTATAGAATTAATGAGTGCATCCTTTTTGGATGAATTAGAGTGGTACCACGGAAAGTAAAGCCCTTTCGTCTCTATAAGAAGACGAGAGGGCTATTTTTATTTAGGAGGAATGAACAATGGCAGTACCTTATAATCATAAGGCGGTTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGTAATATGGGATATATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 298349-300402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTGN01000003.1 Robinsoniella peoriensis strain WT Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 298349 30 100.0 35 .............................. CAGAGCCAGACAATCTATAAAGTTATGGGCTTTAC 298414 30 100.0 37 .............................. TATTTGTATAAAAGCAACTCCAATCTATAGGATTAAT 298481 30 100.0 36 .............................. CGGACTTTTAAACTGCTTCGGAATTCTTCGAAGACC 298547 30 100.0 34 .............................. TTTAATTTATCAATACTGTCAAAAGAGTCAACAA 298611 30 100.0 35 .............................. TTTGATACGCACGTGTACGGTGATCTGGAGTCTTT 298676 30 100.0 36 .............................. TAATGTCCAATCCGGGGAATCCCTCAGAGCGCAGAT 298742 30 100.0 34 .............................. GACAGTGCGTTGATTGCTATTTTTGGAAATCTGC 298806 30 100.0 35 .............................. CAGGTCATTGAGAAAATTATTGATGATAATGGGGT 298871 30 100.0 36 .............................. ATGTACCGGGCAGGCTGCACAGCCATATATGTATCC 298937 30 100.0 36 .............................. TCTGTTGGGTCTGAGAACTGCATCTTCGGATAGAAT 299003 30 100.0 35 .............................. GAAATATTCTCTAATATACTTAACAGTTCGTTGCA 299068 30 100.0 35 .............................. GGCTTGGAATCCCTTGCAACGTCGATCTGTTCCTC 299133 30 100.0 36 .............................. TACAGGACGTTTATGTTTCCTATTGTAATTCCCGCC 299199 30 100.0 36 .............................. TGTTTTCCTTCTTTGATGATCCATTCGTCTGAATCG 299265 30 100.0 36 .............................. GCGCTTGAACCGGCTGTGTTGAAAGTAAAAACAGTA 299331 30 100.0 34 .............................. GAAGAAGAAGTTTTAGAACTTGCAGATGCTATCC 299395 30 100.0 34 .............................. TTTTTGGAATTAAGTTCTTGCCAACTTTGGGAAA 299459 30 100.0 36 .............................. TAGTCACTCACAGGAGTTGGGTAATTTGTAAAATAA 299525 30 100.0 34 .............................. TGAAATAGAATCATAGAATTTCCCAGTCTTCCGA 299589 30 100.0 37 .............................. TAATATCCAATCCGGGGAATCCCTCAAAGCGCAGTTC 299656 30 100.0 37 .............................. AGAACAGGAACATAGATATAATTAAGTTCTCCCATAA 299723 30 100.0 34 .............................. GGGGCTTGAATTCCCGTATTTAGGGTATGTAAAC 299787 30 100.0 35 .............................. AATTCCTTAAACATATCCTCCACATCTTTCTTAAC 299852 30 100.0 36 .............................. ATTGTAAAATATGTACAGTTTAACTCATATCTGAAA 299918 30 100.0 36 .............................. TCTGGTCTACCTGGCACGCATAAGTCTCCGTGTGTT 299984 30 100.0 35 .............................. TAGATAATCGGAAGCATATGTTCATCGTGATATCC 300049 30 100.0 34 .............................. AAAATACTCTTGGCAATCATGTTTGCTACAAAAG 300113 30 100.0 35 .............................. CACAGATGAAATGTTATAATATTCTGACTTTCAAC 300178 30 100.0 35 .............................. ATTTCTATACTTGTCTCGTTTCCATTCTCGTCTTG 300243 30 96.7 34 .......................G...... ACGCGAATCATGTAAGGATTGCCCAGGCAAAATC 300307 30 96.7 35 ................A............. GATATGGAGTGAATGCAAAGCATGGATTTAGATAT 300372 30 80.0 0 ......C.C.......T..C....AA.... | A [300382] ========== ====== ====== ====== ============================== ===================================== ================== 32 30 99.2 35 GATTAATATCAATATAGGATATATTGAAAC # Left flank : TTGTATGAAGAATATCTATCTTTATGGTCTGAGGCAGAATTCATCTGTTGGAATGAAACAATATCTTATTTGACACAGTAAGATAATATTATTTACCGGATTTTTTCACTCTATGCAAAGGAGGAAGGACCACATATGAAAATTTATACCAGGCTTTTTCAAAATATTGTGATAATATTTCTAGTCAGTTAAATTTATGCGGGCTTTCCTTAGGGGCAGTGATGGTACTAAATTATAAAAAATACACTTCAAATTGGCAGAGTAATTATAAAAAAGGGGTCAGGGATTGTGAAGCAGATAGTTTTAGAACTTCAAAGAGTAATAAATTTACCAGGCGGTGTATTTGTGTTTTAGGAATAAAGCCTTATTTTATATAGGAAAATGGGGGAGGATGCGGGGATAGTAAAAAATTTTGTCTTGCTTGGTAAAAAATGAGAAAAACCTTGATTTAGTGGGGGTTTTAGGATATAGTGGTAAGAAAGAAGGCGGGAAATGCGTTG # Right flank : CAGGAGTATGCACATCCAACCTAATCCACACAGTACAAATTTAAAGAATATAAATCAACAAAAATATTATTCGATAATTTAGTATTTAATTTGACAAAATATACCATTTATAATATAATATTACTGTGAAAAATACACAAATTAACCAAAGAAATTTAAATCATATTGATCTAAAATAATAAACTATTTTTATATTAAATTATTAGATCCATATTATTTAGATTTACTTATTAATGGGAGGAGTGAGTTACAATTGTTAGTTTTTGAATACCAGCTGCGGGTACGTCTGTTAGAAAATATGGACTATGCCAAAGCTACCGGAACAATCGCCTATTTCCTGGATAGTGCGCTTGGAAAAACAGATAAATTTCTGGAATTACATAATAGAAGAGAGTTTAAATATTATGTTTATGATCTTCCATATCCATGTGAAAAAGATGGAATTTATCAACAGGGTAAGATTTATGTTATGAGGATTCGAACTGTTCGGCAGGAACTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATATCAATATAGGATATATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 309568-310571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTGN01000003.1 Robinsoniella peoriensis strain WT Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 309568 30 100.0 35 .............................. CCAGTAAACCATCCTTTTATTCCTTCCCATACACC 309633 30 100.0 34 .............................. TGAATTATCGTATGCTGTAAAAGAATGTGGTGTT 309697 30 100.0 34 .............................. GGGTATTGCGTTGCGTTACCGATAGACATTAGTT 309761 30 100.0 35 .............................. GATGCAATCCCATTAAAGGAAGTAGCAGACGGAAC 309826 30 100.0 36 .............................. CCGTCAATGCTTCGAAAAATGAATGCACTGGAATTA 309892 30 100.0 35 .............................. GAGCACAAGCGATGCTGCGTTACAAGAGCTTATTT 309957 30 100.0 34 .............................. AAAGATAATTGTGCTTTTAGCGGCTACACCAGAG 310021 30 100.0 34 .............................. CACGTGGTGTGAATATTGAAACACATGCAGTTAC 310085 30 100.0 35 .............................. ACTGTAAAGGAGACTATTTATCATGAGAAGAAAAA 310150 30 100.0 36 .............................. TTCCCAACTGATACTGGGCATACTGGTTCTCCTGCT 310216 30 100.0 36 .............................. TTCCCAACTGATACTGGGCATACTGGTTCTCCTGCT 310282 30 100.0 35 .............................. GACCATCAAGGAAGGTCTGGACTATTATCAGAATA 310347 30 100.0 35 .............................. TATGCATTTACGAGCTGGTTATGACTATATTTTTT 310412 30 100.0 36 .............................. GGGCTTCCGGGATAAATACGGGGATAAATTAACGGT 310478 30 90.0 34 .................A.C.....A.... TAACAACCGAAGTGATTAGAAGTCTAGCCGCTAA 310542 30 73.3 0 C.......TCC.....A...A....A..T. | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 97.7 35 GATTAATAGTAATATAGGATGTATTGAAAC # Left flank : GTTTATTCCATTCTCGCTTAAGGAGGGAATATAATGAAAAAACAGCCATCTTATAATTATGCTTTTGTATTTTATGACGTCAATGAAAAACGGGTTCAGAAGGTATTTAAAGTTTGCAAAAAATATTTATCACATTTTCAGTATTCCGTATTTCGTGGAGAAATTACACCTTCTAAGTTGATTGAACTCAGAACAGATATAAATAAGGTCATTGACAAAGAAGAAGATTTTGTATGTATTATTAAATTAATGAATGATAATGTGTTTGGAGAGGAGATTCTGGGAAAGCGTGATGTTGCGACGGGAGAGGATTTAATCTTATAATAATTTACCAGGCACCTAAATAAGGAAAGTCTGAAAACGACTGTAGATATAGGAAAAAACAGAGATGTGAAGGATAATGGATGGAAATTATTGGCGCCTGGGAAAATATGTGGAAAGGGTTGATTTTATGGGGGATGTGGGGTATAGTTAAGGGGAAGAATGGCGGAAATGCGTTG # Right flank : CAAATATGTAAAGGTACAAGACAAGCCAAAAGCCTCAGTGCGAGCCACACTGAGGCTTTTATAAATAAGGCGCTTCTTTACTGTTCCTTATGGTTATGCGCTTTACATATCATCTGGGTCATTGTTCCCATGGGGCAAAATGAGCACCAGGTACGGGGGCGGTATAAAAGCATTACGACAATGCCGAGGATAGTTGATGTCAACATAATGCTATAGAAGCCAAATGCAAACTGGGCGATCCAGGGAGATGCAAGATTAGCGGTGTAGGCCCAATGCCAGGGTACTTTGATGGTCCATAGCAATTTAATAACTGTATTCAGGCTGGTTGCCCCTGAAAATACCAGATAGGTTGAAAATACCATCTGTATGAACATCACAAAAAAAAAGATTAGGAAACCGTAACGAAACCATTTGGAATAGATCCATTTTGGGGTGGGTTTATTTCTGGACAATTTGAATTTACTGCCTAATAGGTTCAACAGCTGCCCTCTGCCGCAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGTAATATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //