Array 1 46992-47492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUAR010000012.1 Streptococcus pyogenes strain GCH169 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46992 36 100.0 30 .................................... CTTCGTCAAAAGTCAAAGGGAAAAGGAAGA 47058 36 100.0 30 .................................... TGCGCTGGTTGATTTCTTCTTGCGCTTTTT 47124 36 100.0 30 .................................... TTATATGAACATAACTCAATTTGTAAAAAA 47190 36 100.0 30 .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 47256 36 100.0 30 .................................... AGTGCCGAGGAAAAATTAGGTGCGCTTGGC 47322 36 100.0 30 .................................... TAAATTTGTTTAGCAGGTAAACCGTGCTTT 47388 36 100.0 30 .................................... TTCAGCACACTGAGACTTGTTGAGTTCCAT 47454 36 97.2 0 ................................C... | T,TT [47483,47487] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTTATGATTAAGCCATATGGGGTTAAGCAAGGGGAGGTAGTTGGAGAGGTTTTACGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGATAATTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTAAGGATGCTCTTTGCGGAACCATTCGTGAGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 86765-86470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUAR010000014.1 Streptococcus pyogenes strain GCH169 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 86764 32 100.0 35 ................................ AAAAAGCATATCACGAAAATCACCAATTACATCAG 86697 32 100.0 33 ................................ AAGTCATTTTCTGCTTCTGCTAGGTTTGCTTTA 86632 32 100.0 34 ................................ TTTTTACTTTGATTACATCCCGCAATGTCACAGC 86566 32 100.0 33 ................................ TGTCCGCATACCTTGATTTGAGCGAGTAAACTC 86501 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 5 32 99.4 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCTATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : ATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //