Array 1 560647-559621 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP009159.1 Actinobacillus suis ATCC 33415 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    560646	    36	  97.2	    30	..C.................................	TTTATATGCTTACATCACTTCATTCACTGC	
    560580	    36	 100.0	    30	....................................	TTGCTTTACGAAGGTATAAGCTCCGTCCTA	
    560514	    36	 100.0	    30	....................................	GACAGCATATCTGTTAAACCCGGTCAGAAT	
    560448	    36	 100.0	    30	....................................	CGCATACATTAGGCATTACCCTCAACCACT	
    560382	    36	 100.0	    30	....................................	AAATGGGGCGAGCCAAAGCGAGAGCGAAAG	
    560316	    36	 100.0	    30	....................................	AATCAGGGCACTTCTTGCTCAAACGGTGTA	
    560250	    36	 100.0	    30	....................................	GGGATAGATATTACATGGCTCATAAATTCC	
    560184	    36	 100.0	    30	....................................	TCAATATTGCTGCCATTTTTCGCATTTTTT	
    560118	    36	 100.0	    30	....................................	GAAGGCTTTAACTATGATGCGGTAAACGAA	
    560052	    36	 100.0	    30	....................................	AAGTGTTGGCCACTCAAATATCCAACAGCG	
    559986	    36	 100.0	    30	....................................	TCCAAAAATGAATAAATTCTCTCACGTTTT	
    559920	    36	 100.0	    30	....................................	TTACCGATGATTGGCAATTTATCGGTTATA	
    559854	    36	 100.0	    30	....................................	GAGGATGCGGATCGCGATATTAATGCTGTC	
    559788	    36	 100.0	    30	....................................	GATCCAATAGCAGATAAGGCAAACATAGTG	
    559722	    36	 100.0	    30	....................................	TGAATCAATATTGATAACAACATTCTTAGG	
    559656	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.8	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   ATTTACCTTGATTTGTGCAGCTTTATGCCACACCAGTTTTGCAAATTCTGCTGAAAATCCGACCGCTTATACGGAACACGCCAAATACAAAATCTCCGCTACCGATATGAAAATCTTGGTTCGTCAGTTAAATAATATTGAACAATGCCTTTTCCCCGATCTTGCAAAACCGAATTACCAACAAATCTATGACAATTGGTCTGTTGCCGAAAGCATGACGATGCTCTATTTCCAGCAAAATTTATTAAAAGAGTTAATTGGCGAACACAATGCTCAATTGATCGAAAAAGACGAATCCTCACGTCTTTACTTTGAGCAAATGCATGAAAAATATAACCACCAAAAAGCTAATGTTGATAAATCTCGCTGCGAAGAGTTCAAACCAATCTACGCTCAAATCAAACAGCAAATTGAATACTCAATACCACAGGTGTATAAATAAGCTTTCTTAGTTATTTCACATAGCTACAATTCGACTCTGGTACACGACTTCGTCAGGA
# Right flank :  CGGGACTCTAAAAAGCCTTGAGCAGTAAGGGTTCAAGGCTTTTTTATTATTAAAAAAATTGCCTTAAAACAGTAAAAGTTGGTTCGAATTCACCTTTTTTTCTTGCAATTTTTTCTCTCCAACTAGAATTTCCATATTGGCGAATTGTTTTTCAGTAATAGAAATGCAACGAATTGAACCCTCTTCAGGTAAATGTTCTACTAGTCTTTTATGATGTTTTTCCATTGAATCTCGCCCTCGAATAATTCGAGTATAAATAGAAAGTTGTAACATTTGGTAGCCATCTTTCAGCAAAAATTGCCGAAATTGATTTGCGGCTCGCATTTTGGCTTTGGTTGTTACAGGTAAATCAAATAATACAATCATACGCATAAACACATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCAGGAAGTTTTAACAAATCTGCATTTCGTTGAGTTAATGCAGATTGAAATGAACTCACGCTTCGCTCAATACCGGTTAAGGTA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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