Array 1 413604-414053 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGOC01000001.1 Enterobacter roggenkampii TUM15672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 413604 28 100.0 32 ............................ GTTAACAGCGCGTCGTCTTCCGTAAAATCCAG 413664 28 100.0 32 ............................ CGGAACCGCTTATACCGTCTGCAATTCCATCC 413724 28 100.0 32 ............................ CGACAGCGTGGCGCGGAGACCCTGCGTCGCTT 413784 28 100.0 33 ............................ CTGACTGTTTTCCTCCAGCGCCTGAGCTTGTCC 413845 28 100.0 32 ............................ TCAGGAGTAAGCAGCAACAGCAGTCAGCAATA 413905 28 100.0 33 ............................ AAGTCCGGGCTAACGATATGGTGACACGTCAGT 413966 28 100.0 32 ............................ AAACGGGCAGGAGTTAAAAATGAAAACAACAG 414026 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGCATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGCTCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTAGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCTTTTTTATTGGTGAGTTTTAAGTTTTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCGAGGACCAGATCGCCCTGGGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATCTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACTTCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 428959-429648 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGOC01000001.1 Enterobacter roggenkampii TUM15672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 428959 28 100.0 32 ............................ TTGCGAAACCGGTGACCGCGGCGAACTGACCC 429019 28 100.0 32 ............................ GGACATGGCAGGACGTCAGGGTAATCAGTCAC 429079 28 100.0 32 ............................ ATGAGCGTGGCTAGTTCTTTTGTCATTGCAAA 429139 28 100.0 32 ............................ ATTGTCGCAGGCTTTTCTTTTGAGTCGGCTGC 429199 28 100.0 32 ............................ CAGGTGATAATGTGGACGGGCTAATTTCGAGC 429259 28 100.0 33 ............................ TTGGTCAAATAAGCGCAAGGTTAAACCCTTATT 429320 28 100.0 32 ............................ TCTGCCGCGTCTGTTTTCCTCGCCTCACGCGG 429380 28 100.0 32 ............................ CAGTGAAGCATTCATAGCCCGAGAGGTTTTAC 429440 28 100.0 32 ............................ TGATGAAGGCAGGCGAGAAAACAGAAGAGTAT 429500 28 100.0 32 ............................ TCCTTCGCCATTGCAGTAAAGGACTGTGTGAG 429560 28 100.0 33 ............................ AAGCGGGGTAGCAGAATATCGAGCCAGCGCAGT 429621 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCACAAACGCAGCCCGTATGTCGTTGCCTTGGGGCTTATCTGGAAGAGGTAAAATCCGGCCTCACAGAATCCATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACTGCGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACCTTTTGATTTATATAATGCTAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTCA # Right flank : AAAAACAACTCTCTAAAACATTCAGCTTACCTATTTAAAACTTAATACGATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCTAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACTTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTGACACAAATGGCAATGCGGGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 439145-441396 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGOC01000001.1 Enterobacter roggenkampii TUM15672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439145 28 100.0 32 ............................ TGATGGCCGGACTACTCATGCCCGGCGCTCAG 439205 28 100.0 32 ............................ ACCGCGATGTACAGCAATGACCCAGGCCACGA 439265 28 100.0 32 ............................ AGCCTGAAAGTTTCGGAATGCCTGTGGGTCTG 439325 28 100.0 32 ............................ ATCGATTGAGTAATATTCATTTTCATCAGTCA 439385 28 100.0 32 ............................ TTACCTGAAACTCTACCGGGCGAATTATCCTG 439445 28 100.0 33 ............................ TCCCGAGGCTGTCGTGGTCTGGCAGGACCATGA 439506 28 100.0 32 ............................ TATACCGAAATGAAGCTGCAGATGGCGGCAGC 439566 28 100.0 32 ............................ CCGGTCAGCTGCACGGAACAGCTCGGCCTCGA 439626 28 100.0 32 ............................ TGGCGCAAATCGTCAGCACGCTGGCGCAGCCG 439686 28 100.0 32 ............................ CAAAGGTCGAGCCTGAGCCGGATATGTGGGAT 439746 28 100.0 32 ............................ TACATTCGTTAGGATCTAAAACAATATATTCC 439806 28 100.0 32 ............................ TCAATGAATTCAATTAATTCTTCCATCAATAC 439866 28 100.0 33 ............................ CTCCACGCAAGCGCAATTAGCGCCTTCGCCTGG 439927 28 100.0 33 ............................ GCAAAGTCCAGAGCGCTCCCGGTCAGTTGGGAA 439988 28 100.0 32 ............................ TTAAAGGCGCGATCAGTAACAGCCGGTGCATG 440048 28 100.0 31 ............................ CGTCGGAAAAAAATAAAGACTGTAACTACCT 440107 28 100.0 32 ............................ TGAAGATATTCAGTAAGGGAGATCTCGCCCTC 440167 28 100.0 32 ............................ TCAGCGCTACAACAAGATCCGCGCGGAATTCA 440227 28 100.0 32 ............................ GGTCAGCAGCTCTTTGCGGTAATTCAGGATAT 440287 28 100.0 32 ............................ GGTTCGGTGCAGTGGTCATTAACTGCGGTTGT 440347 28 100.0 32 ............................ TTCGAGGTCAGCGAAGTCTGGCAGGATGAAGT 440407 28 100.0 32 ............................ AACACGGTATAAGTAGTTTCCAGGGTCATGCC 440467 28 100.0 32 ............................ AAAAAATTCAAGAAAGGGAAGGGGAAGACACC 440527 28 100.0 32 ............................ ATATTTCCATCCGCCGTTAGGCGCAAATATTT 440587 28 100.0 32 ............................ GTCCTGGGGCGAGCAAACAACGGGGAACGACG 440647 28 100.0 32 ............................ GAACTGGCGAATGCCGGAATGGATGCGCATCT 440707 28 100.0 33 ............................ GAAGACTCCAGCAATACATTCTTGATAAATCAT 440768 28 96.4 32 ................A........... TGGTGATGCTCTGCAATCAGCGGGACAACGGT 440828 28 100.0 32 ............................ CAAACTCCGCAATTTGTTTTTCTGTCAATGGG 440888 28 100.0 33 ............................ ATAACATTAAGAGATGTTCCGGCAGCAGTACCG 440949 28 100.0 32 ............................ CACTCGGTCTGGCCGCAACTGCCACGCCTGAC 441009 28 100.0 32 ............................ AGTACGTCCTCGACGAACAGCTTGCTGCGAAA 441069 28 100.0 32 ............................ GCACAACACGGAAACAAACCACCTTAACGCTG 441129 28 100.0 32 ............................ TACTCCGTACCTGGTTACATTGACCACTTCTA 441189 28 96.4 32 ..T......................... GTACTCGATACCCTCAAAACCGAATTTAAGCT 441249 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 441309 28 85.7 31 A..........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [441333] 441369 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGTGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGGCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGCCGTCCACTCGTGGATGTTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCATGGTGGATGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTTAGAGAGGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGGGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //