Array 1 970489-971980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014665.1 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1766 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970489 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 970550 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 970611 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 970672 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 970733 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 970794 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 970855 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 970916 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 970977 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 971038 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 971099 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 971160 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 971221 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 971282 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 971343 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 971404 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 971465 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 971526 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 971587 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 971648 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 971709 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 971770 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 971831 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 971892 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 971953 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 988295-988812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014665.1 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1766 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 988295 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 988356 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 988417 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 988478 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 988539 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 988600 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 988661 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 988722 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 988783 29 93.1 0 ............TC............... | A [988810] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //