Array 1 8903-9852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDSA01000228.1 Clostridium haemolyticum NCTC 8350 Contig228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8903 30 100.0 36 .............................. AAATTGTCCAGACCCTTTTCGGCATCATATCTCAAA 8969 30 100.0 36 .............................. ATTAGAAAACAGTTTTGAAAGTTTTATTATAGAATA 9035 30 100.0 36 .............................. TTTTATTGGGATTTGGGAGCATGCAAAAATAAGATC 9101 30 100.0 37 .............................. CCTTCTAATATTTTTTGGATTTTTAAAATAATTTCAA 9168 30 100.0 36 .............................. GCAAATATACTCTCAATTAAAGGTGCTACCTTAGCA 9234 30 100.0 36 .............................. TAATTTCAAATGCTAATTTTTGTTTTTCTTTAAAGG 9300 30 100.0 37 .............................. AGATATGGATAGACTTGTTGAAGCATATTTATCCGAA 9367 30 100.0 35 .............................. TTAGAATCTAAATCTAATTTTAAGGATATTCTTAC 9432 30 100.0 36 .............................. AATATATTGTCTATATTCTTTTTTATTTTATATAAA 9498 30 100.0 36 .............................. GTTAGTAGAATTATTTCTCTAGCATTACTGCCGACG 9564 30 100.0 34 .............................. TCATTTCCACCACTTATCTGTTTTGAGTTTTTTA 9628 30 100.0 36 .............................. AACTATGAGCAGATTTCAGCCATTAGGAAAAAATAG 9694 30 100.0 34 .............................. ACAACGGAAATATTTTCCCAGCACCCTTAAAAAC 9758 30 100.0 35 .............................. TCCGTATAAATACCGTTTATCTTACCTTCGTAAAT 9823 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.8 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTGTTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTTAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATGAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : TAAAAATTAGTTAAATACTAATACAACTTATTATAAAAAAATATTATAAATAATAAAAATTATGTGTATTTTAAAAATTTACTATAAATTAATAAAAAAATAACTATAATATTCAAAAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATTCTATCTGTAATAAAATAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCTGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTTTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-93.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2260-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDSA01000007.1 Clostridium haemolyticum NCTC 8350 Contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2259 29 100.0 37 ............................. TAATAAAACCTCCTTGGAATTTGTACTAAAAAATAAC 2193 29 100.0 36 ............................. CCACTTATAAATAACACTATGGGAAATGTAGTTAAT 2128 29 100.0 38 ............................. AATAAACATTATAACTATAATTGCAATAACCCAAACCC 2061 29 100.0 38 ............................. CTTCTTAGAAGATGAAAGAGTTTATCTAAGCAAACAAT 1994 29 100.0 36 ............................. GATAAAAACCGTGGTGCTCAAGATGGCTGGCGTACT 1929 29 100.0 36 ............................. TAAAATTTAGTCTAGTCCTTCTTCTTCTGCTATTTT 1864 29 100.0 38 ............................. ACTAAATAATGCTAATGATAATATAAATATAGATGATA 1797 29 100.0 36 ............................. AGTATAGTCCAATTTCATCTATGGGAAGTGGCTCGA 1732 29 100.0 38 ............................. ACATCAACAGAGCCTAAAGTGGTTGAAAATAAAAATAA 1665 29 100.0 34 ............................. TTTTTATTTCTTGTACTGTAATAAGTTCACTTAC 1602 29 100.0 38 ............................. ATATAAAAAATCGAGAAGGTTTATTTATGTACGGAAAT 1535 29 100.0 39 ............................. TCTAATTTAAATACTAGCAACCCGTCAATTTCTCTATAC 1467 29 100.0 38 ............................. AAGAATTTATAGAAAATGTAGAAGATTCTACAGTGTTT 1400 29 100.0 37 ............................. TTATATGTCTAGCACCTATTAATTTTTTAATATCTTT 1334 29 100.0 39 ............................. ATTACACAATAATTACATATATTTATAGTAAAGAAATAG 1266 29 100.0 37 ............................. TTATACAACTCTAATTTATCAGATGAAGAACGTATAA 1200 29 100.0 36 ............................. TTAAAATGTTGATATGCAAGACTTTAAAAGAACAAC 1135 29 100.0 37 ............................. TTTAGTTTTAATTTGTCCATTACTAGTGTCTATATTT 1069 29 100.0 37 ............................. CTAGAGGTATTGGTTATTGTAGATTTACTATTTTTAA 1003 29 100.0 39 ............................. ATATAGATTAAAGTATATCTAGGATCACTATGATTTAGA 935 29 100.0 36 ............................. ATCCTCATTCGCATTAAAGATTTTACAAATATCTTT 870 29 100.0 36 ............................. ATTACCCCCCAGTTAGATTGTAATTCTGCATTTTTT 805 29 100.0 37 ............................. TTGTAGTTTTCCCAACAATATTTCGTAACAACTTTTC 739 29 100.0 35 ............................. CTTTCAAACAAGTTGTTTGCAAGTTAGCTTTATTA 675 29 82.8 0 ...............AC..T...T....A | A,CT,T [649,654,660] ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : GAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAGTTAATGTTTGTTATATTAACCTATGATATTGAGGAAAAAAGAATAAATAGAGTAAGAAAACTCTTAAAAAAATATTTAACATGGACTCAAAATTCAGTATTTGAAGGAGAAATTACAGAAGGAAAATTGCATAAATGTTTATCTGAAATAAATAAATACATTGACAAAAAAGCAGATTCAATATACATTTATAGGGTTAAGATGAGTAAAAATATAACGAAAGATGTAATAGGGATTGAAAAAAGTTTTGATGAATTATTTTTATAAATAAATAGAATTTGCAGTATTACAAACAAATGTTCTTATTGATTCAAAGCATTGATATATCTAGAATTAAGCATGTTATTTAAGAAAAATAAAAAACATCATTGAAGGTTTACTGCAAAATTGTTTAAATTAGATATGTAGCTGTTTGCTTCAAGAGCAGTAGTATCAATGGTTTAAGGTGTTTTGAATTTTAGG # Right flank : AGCTGATTTTCCTGAAATGTATATTAAATAAAGAAAAGTAATTTATTTGAATCAAATAAATATAGATATCCTATTTATATTCTTAGAATTTTTTAAGAAACTAGCTTTAATTTATGAAGAACTGTTTTAACTGGAACATTGCTTTTAGCTTGATTATATACAAATAACACAAGGTTTTTAGCCGTTAGGCTTCGTATATAGATAATGGTATCACCTATGGTGGTTATTTGATTTAGATGATGCAACCTATATAGTTCAAGAAAATTAATTGTCAAAAATACAAGTAAAAAATATCTCTCGATAGAGATTAAGCTTTGAACTTTATAGTTATCAAAGCCTAAATGTGTTTTAAGATATTTATAGTTAGTTTCAATACTCCACCTATTAAAATAGTATTTGATTACTGTCTCAGAATTAAGTGTTATATCACTAGAAAGTATATATACAGGTGGTTTCAACTTATCACCATTAACTTCATAACAAATTAAAACTAGTGCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //