Array 1 62609-60180 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJH01000015.1 Vibrio cholerae strain 4119 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62608 28 100.0 32 ............................ TGCCCATCCGGTTTAGTGACCAACGGCGTGGG 62548 28 100.0 32 ............................ TTATCACGGGCGGGGCGATAGTCGGCCAAGAA 62488 28 100.0 32 ............................ GCTCTCGTTTTCAAGGAGTTTGATCGGCTCTT 62428 28 100.0 32 ............................ CAAAGCGCTGCGCGATCTCGATTACCGCCTCA 62368 28 100.0 32 ............................ TTCAAGCTCTCCACTTGTTTAACGATATTTGT 62308 28 100.0 32 ............................ GTCAGCAAACACGACAGGAACATCAAGGCCAG 62248 28 100.0 32 ............................ TTTTTTGATGGCGGCTTAAACCGAATTTTTGT 62188 28 100.0 32 ............................ TCGATACTTGAGAAGAACGTGCCGGTGTCAAC 62128 28 100.0 32 ............................ TGACCCAGAACCAGAGCCACAACCAGACCCAG 62068 28 100.0 32 ............................ TTGTTGAATACCACCATTGATTCGAGCATGGC 62008 28 100.0 32 ............................ CACCATCAAATGCTTCACGCGAGATAAAGCCG 61948 28 100.0 32 ............................ TGTATTTCTTTGTGATGCCAGAAGTCCAAAAT 61888 28 100.0 32 ............................ TCAACATTGTTCAATCGCACGTAAAGCTCTTT 61828 28 100.0 32 ............................ AAAAGCGGAAACACTGCTAGTGAGCGACGAAT 61768 28 100.0 32 ............................ TCTACGAATACCACGTCAGCAGTTGTGTTCGG 61708 28 100.0 33 ............................ TAGTGACGGCGGTGACGTTAACGCCATGACTAT 61647 28 100.0 32 ............................ ACGAAACAGTGCGTTTGCGTGTACACCGTGAT 61587 28 100.0 32 ............................ GATTGATTGGGGCGCATAATGATTTATCTCAG 61527 28 100.0 32 ............................ ATTGAAATGTTCTGAACGATGAAAATCACATC 61467 28 100.0 32 ............................ AGTTGAGCCAGTTCCAGACCCTGACAACCCAA 61407 28 100.0 32 ............................ TACCAACGCTATCTACTGCGAGTTCAAATTGA 61347 28 100.0 32 ............................ GTACTGGCGCACGTTATGTGTTGTGCGGCTTT 61287 28 100.0 32 ............................ GCGACGAATTTCAGGGTTAGCAATAGAGTGGT 61227 28 100.0 32 ............................ TGCAAAAACTCGGTTATCCGTTTTTTTTATCA 61167 28 100.0 32 ............................ AGATTAATGCGGTGTATTCATCTTTGGCGTAG 61107 28 100.0 32 ............................ TGGGTTGTAGTTCCAACCCGGCTCAATGCCTT 61047 28 100.0 32 ............................ TGCATCGTTGGCAGTTCGCGCTGACGGTCAAT 60987 28 100.0 32 ............................ AGTCGAGATTTACGCGGGGGTAGCTCGCCTAA 60927 28 100.0 32 ............................ GCCCGTCGAGCGGGCAGCTATCGCGGGATCAA 60867 28 100.0 32 ............................ TAGCTTCTCCAACGTCGCCGCAGGTTCTACGG 60807 28 100.0 32 ............................ GCCCGTCGAGCGGGCAGCTATCGCGGGATCAA 60747 28 100.0 32 ............................ GTTAACGCAAAAGACGCAGGCAGCGTGGCAGG 60687 28 100.0 32 ............................ TTTGGCCGTAATAAGAGATCACTTTCTGCCAT 60627 28 100.0 32 ............................ AGTTCAAAAAAGTACACAAAGCCGCCCGTCGA 60567 28 100.0 32 ............................ AGTACGGATACTCAGGTACGTTTGAAGAGTTT 60507 28 100.0 32 ............................ ATTAGTGGTGCGAAGATGTGAAATGAGCGTGG 60447 28 100.0 32 ............................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 60387 28 100.0 32 ............................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 60327 28 100.0 32 ............................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 60267 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 60207 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //