Array 1 133479-132594 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWO01000042.1 Escherichia albertii strain ZZG 12-3 entry42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 133478 29 100.0 32 ............................. GTTACCGAACCCCGGACTGTTGACGCAGTTGC 133417 29 100.0 32 ............................. GCGAACCATACCGGCACGACGGAGGCGTTCAA 133356 29 100.0 32 ............................. GCTCAGAATGAGACTAACGTGCAGTATTACAT 133295 29 100.0 32 ............................. CATCATCGCGGCTGTGAATTACGGGACAGGAT 133234 29 100.0 32 ............................. CCAGCCATCAGGTAAATCACCGCGAGCAAACA 133173 29 100.0 32 ............................. CAGGGCAGGCTGGTGTTGCTGCAATGATTATC 133112 29 100.0 32 ............................. TTAGTTGTGCCTCCGGCGCTTATCTCCGGCAG 133051 29 100.0 32 ............................. GGTAGCATATATTTTGCCGGGTCATAACGGCA 132990 29 100.0 32 ............................. AAACAAACCTTAATAAGATAGACCTTGTTGCG 132929 29 100.0 33 ............................. TCGCTTATGAAGGCTCCGGCAGCGGAGACTGGC 132867 29 100.0 32 ............................. GTTTCATCGTGGGTGTCGGTTATAAATTCTGA 132806 29 100.0 32 ............................. CAGATAATCAGATTTCCAATAACCACCAGCCA 132745 29 100.0 32 ............................. TCGAACCAGTCTGCGGCGTCCAGTGAGATTGT 132684 29 100.0 32 ............................. CTCCGCTACCGCCTCGGTGAACAGGTACACAT 132623 29 86.2 0 ........................TCTG. | A [132596] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCCGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTTGTTGGTAGATTGTTGATGTGGAATAAACTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CTTCTATTTTCAAACTCATCAGGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTCGCTTCAACGGAAAGTACAGCAATACCTGCTTTGTCGAAAACTTCTGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGTTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160134-159923 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWO01000042.1 Escherichia albertii strain ZZG 12-3 entry42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160133 29 100.0 32 ............................. CTGCCATCGTCCAGGCCAGCTGCGCGCGGCGC 160072 29 100.0 32 ............................. GCTGGCATCAACTGGCTAAAGAATATGATGGC 160011 29 100.0 32 ............................. TACCCCGAAATTAATGGCGATGGGGCGTTTAC 159950 28 89.7 0 ........T................-..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTTCAGCCAATTAGCCAGAAGGAAGATGCTACGCGTTTATGTATCGATACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACGCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTACATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTAGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCACCCGGTCTTCCTCACTTACGCATTCGACCAGCTCTGGATAGAATCCGCATTTCCCAGCTCACCATGTATCACTTCATAAGATTTTTTCAGGATCATATCAGTGTGCTTGGTTAACTCCTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAATCGGTATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCCGCTCCCAGGCTTGCACAGCCGTTAATGGCATTACGTCGTGCAGGAAGGTTGAATACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 400445-399637 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWO01000081.1 Escherichia albertii strain ZZG 12-3 entry81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 400444 28 100.0 32 ............................ AATAAATTTTTAGCACCCCCATTCTCGGTCCT 400384 28 100.0 32 ............................ ACCAGCAGCGGCAGATTAAATAAAAAGCCCGA 400324 28 100.0 32 ............................ GTGACCGTCCCTGCAAATGCCGGATGCACAAT 400264 28 100.0 32 ............................ GAATTAACTCGGCGAACGGAGTAAACGATGTG 400204 28 100.0 32 ............................ AGTGATTCACGCGGCGAACTGTGTTACCTGCA 400144 28 100.0 32 ............................ ATACCCAATAAAGCGGGTAGCAGTCTGATTCA 400084 28 100.0 32 ............................ GTTCTCCCCGCCACGTCGTTCAGACTGTCGCT 400024 28 100.0 32 ............................ AACACGAATAGATCGCATTGTGAACACCTCCG 399964 28 100.0 32 ............................ GCATAGACAACACAGACCGTCATCGCGCTGGA 399904 28 100.0 32 ............................ TTTGTGACGTACTGGCGACAATGGTTTATCAG 399844 28 100.0 32 ............................ ACACGCAAGCTGAAAAAAATCGGTAAAGCGGA 399784 28 100.0 32 ............................ CCGGTGATACGGGCGGAACGACGCGTTTTTTG 399724 28 100.0 32 ............................ GACAAAATGCGATAGTTTGACAATGTGTCATG 399664 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCATCCCCCCGGATGTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCCTAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTCTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAATAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 415458-414888 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWO01000081.1 Escherichia albertii strain ZZG 12-3 entry81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 415457 28 100.0 33 ............................ GTCGTGCAGGCGGTAGCGAATACGCGCATCCAG 415396 28 100.0 32 ............................ ATTTCGAAATTGAAGACTGGGCGGCAAATAAT 415336 28 100.0 32 ............................ AGCCCGTTAAATTGCTCTGTGCGCGCCCACTG 415276 28 100.0 32 ............................ TAGGGCAGGGGCTCCCCAGAGATTTCCCCCCC 415216 28 100.0 32 ............................ GCGCTATGCTCACCGTCGGCACAAAGCATATA 415156 28 100.0 32 ............................ CAAAGGGCGCACTGCAACCGTCAGAATCAGAA 415096 28 100.0 32 ............................ TGGAAATCATGAGCAGCCCCGCAGACACGAAC 415036 28 100.0 32 ............................ ACCAGCGACTTCAATCGCTTTATCCAGACCAG 414976 28 100.0 32 ............................ GACTGGTTTAAACAGCGCTACGGCCAGATGTT 414916 28 92.9 0 ....................T...C... | C [414893] ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGCCAGGTGACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGCTTCCAGAGTGCGCAAAAGCATAAACCGGAAGCCGCGCATTAATCTGATGGCGAAAAAAAATGCCTGATGCGCTGCGCTTATCAGGCCTACAAGGTTCGTGCAATCTATTGAATTTGCATGATTTTGTAGATTGGGTAAGGTGAATGTGCCGCATTCGACATAAACAAATCGCACGTTGTTAACAATCTGAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGCGCTTCGACGGAGCAGATGTGACCTTTTTTTGCGGGGGTGACGTAATTTATTGATAAAACTATGCGCAGGGATGTAGGGATAAAAAAGGGTCTGAGCGGGGAGTATTGATGGTTTCGCTTTATTAACAACGGACTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCTTCAGTACACAATAACAATCGTAATAATTGCGACGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACAGCATTGATGTTGGGGATGGGAACATCCGTGACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //