Array 1 357935-357175 **** Predicted by CRISPRDetect 2.4 *** >NC_020053.1 Chamaesiphon minutus PCC 6605 plasmid pCHA6605.01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================= ================== 357934 36 100.0 36 .................................... TACGTTAGGCGTGGCGACCTTGCTCGGTTCCCAGGA 357862 36 100.0 36 .................................... TAACCTACCTAACGACACCGATTTTATTATCTACTC 357790 36 100.0 38 .................................... TATCCTGCGCTATCCGTTTTAGGTCGGGAGGCTCGAAC 357716 36 100.0 37 .................................... TGATTTCGGCGAGGCGATCTTCGGCACAACTGCCAGA 357643 36 100.0 36 .................................... TTGCCCGAATCAAAGAAAGAATCTAAGCCACCTGCT 357571 36 91.7 42 ......C...T.C....................... GACCATCGATTAGTGTACGATCCGGCAGAAACAACGCGATCG 357493 36 91.7 38 ......C...T.C....................... GAGTCGATCGGGTGTCATCGCAAAACCATATTGATAAT 357419 36 94.4 37 A...............A................... GGAGCATGGTAAGCCAATCGTCCTCAACATCTACACG 357346 36 100.0 97 .................................... GAAGTCGATCCACTAAGGTGTGGCGAATTGTGCAGCTTTTTTTTGGGCTGCTGAGGATGGTAGTTCTGTGGGACAACGTTGTCCCACAGACTAATGG 357213 36 83.3 0 ...........T..........A.....A.C.A.G. | TTT [357195] ========== ====== ====== ====== ==================================== ================================================================================================= ================== 10 36 96.1 44 GTGACATCAGCCTTTCGGGGCTGGTGAGGGTTGTAA # Left flank : ATGCGATTTCATCACAGCAAAATCCTAATGTTTATAATTACTTAGAAGGTCTTAAAAAGTTGGAATGGGATACAGTCAGCCAAAAATGGCAAATGATCTCTCCAACAACTCCCGTACTAGTCAATCCTCTTAGATGGGGTGCCTCCTCTAGTATTCTTGCTGAGTATGATGAGGCAATGAGCAAGGCTAATTATCGAGTCCTACAGCGGCACTGTGTCGGTTTGTATAAGGGCAAGTATCAAAAAGCTAAAGATACTCAATGTGTTTCTGACAGCCAGATTAAAGGTCTAGGGGAATGGGTGGGTACATATGATATGGGCGTAGTCATCAACGCGAACCCCTAGTGATGGTCAAATTCCTGGGAGGTTCGCGATCGCATACACAGTAAAGATTATGAGCATTTAGGTGTTATTCTGAAGGGATGAATTTATCAGCCAAACTACAGGTTCGCGATCGGCATGGGTGTAATACTTGCTGTATAAGCGTTGTGGATGGCTGGT # Right flank : GAACGGCAAACTGATCTTTACTCTGCGGGGCAATACCGATGACATCGGCTCCGAAAGGCTGATTAGTGCTGTAAGTAAGTGGAGTAACGATCGAGAGTTAAGCGCATTTTTATTACAAACATCACCAGTCCCAAAAGATTAGTGATGTTTAAATCTCTAGCACTGCCATTAATGTCACCGATAGGCAGTAGTTAGGCCAAATTGCACTGATATTTTGTAGAACCAGTTGTTAAAATTGGAGTAGATGAATAAGCATGGTAACTATGATTAACGTTAACGATCAGAGGATTTTTGAACTTGACTTTGGTTGTCCGTTAGAACCAGACGATCTCTTAAGCTACTATGCAAATGGAATGCTTATTCCAACAGATCGAGCAAAGTTTTTGAAAAACCATGTTGAAAATGGCTATAAGGAGCCTCTGAAAATACTTACGAATCGTGAGAAAAGAGCTGCTCAAGAAATAACCGAAATCCTAAAAATGGAGTCTGAGTACGAGTCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACATCAGCCTTTCGGGGCTGGTGAGGGTTGTAA # Alternate repeat : GTGACACCAGTCCTTCGGGGCTGGTGAGGGTTGTAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2089164-2085673 **** Predicted by CRISPRDetect 2.4 *** >NC_019697.1 Chamaesiphon minutus PCC 6605, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2089163 37 100.0 35 ..................................... TGCCGTGGGTGGGTTGGTACTTGGCGTTACATCCT 2089091 37 100.0 35 ..................................... ATCTTCAGCAGAAGGACGGACAGAAACCGTCAACG 2089019 37 100.0 33 ..................................... TATCTCGCGTTGGTGCTTGACCTGCTGCCTTGC 2088949 37 100.0 32 ..................................... TACTTGCTCGCTCGCGTACCCAAATCGGCAAA 2088880 37 100.0 34 ..................................... AGTAGATGGCTCCATCGGGCAGCGGTGGCTGTTG 2088809 37 100.0 38 ..................................... TTGATTGTCGGTAACTCGGAGGTGCCGACCCAGCACAC 2088734 37 100.0 34 ..................................... AACACCCAAGGACAGATCCGATTCTGGGTACGAT 2088663 37 100.0 38 ..................................... TAATATACTAGCCGATTTTGTTGACAATCAGATAATAT 2088588 37 100.0 33 ..................................... AGCGAACGCCAGACACGAGCAAGTGTGGGTTAT 2088518 37 100.0 39 ..................................... AGTCGCGAGGTCGAGATGGAAAAATTGACCGATTTTGTC 2088442 37 100.0 38 ..................................... CACCGATGGGAGGATTTAGAGACATAGGTTAAAATCAA 2088367 37 100.0 34 ..................................... TGGAAAGTCAGCAGTCTCGATAAATTTCCCGCTC 2088296 37 100.0 36 ..................................... TGCCTGTGTCGATGCTATTTGCCCCAAGTGCGGATC 2088223 37 100.0 36 ..................................... CCCAGCTCCGAGTTGCACGAGGTTTTACCCGTGGTG 2088150 37 100.0 39 ..................................... TAGCGCAATACCGCTAGTGCTACCCCCAGGTGTACCCCG 2088074 37 100.0 33 ..................................... TAGCTGCTTCTCGATTAGTGGGATTGGCTTTTT 2088004 37 100.0 33 ..................................... CCCAGCTCTAAAAGATACTCGATAGTAGGCTCG 2087934 37 100.0 36 ..................................... GATCGAATGAGTTAGGAATTGCTCAATTTCGTCGAT 2087861 37 100.0 36 ..................................... CCTTATCGCAATCCTTTATTAAGCAGACAGTAAAGC 2087788 37 100.0 34 ..................................... AGCACTTACAAACTCGCCTTGGGGCTGTTGTGGT 2087717 37 100.0 35 ..................................... TTCCATATCCTGACTTGGGATTTTTACCATCGTGC 2087645 37 100.0 34 ..................................... CAGGATTCGCCTGTTAGGGTGACGTAGACGTCAC 2087574 37 100.0 36 ..................................... AAGTTAGCACTACTGATTTTAGTTTGTCTATCCGTG 2087501 37 100.0 33 ..................................... CATCAGTTGATGTTTCTGTTTTGTTAACCGCAG 2087431 37 100.0 34 ..................................... TGGTCAATGCGTAAATTACTTGTGAGTCTTCCAG 2087360 37 100.0 36 ..................................... ATTGTTGGTAGTATCATCGGTAGCAATTTCTGAGTC 2087287 37 100.0 36 ..................................... GTATCGATCGCCACATTGTAACCGCTACGTACCGAG 2087214 37 100.0 35 ..................................... ATCGGTCTGACCGCCGCAAATTAAAGCTTTGGTGC 2087142 37 100.0 33 ..................................... CCCAACTGGCATCGGAAATCGATCGATTCAATC 2087072 37 97.3 34 ....................C................ CTGGAGATACAGCGGTCACACCCGTGGCTTGGAA 2087001 37 97.3 39 ....................C................ ATCAACAATCCTAACCCATCTGGTGAAGGGACATACATC 2086925 37 97.3 35 ....................C................ ACCATACTGGGGCTTGCGATTTTTATATGGCTGGA 2086853 37 97.3 32 ....................C................ GCCGTAACCGTACCGCCAAAATCGCCACCTTT 2086784 37 97.3 33 ....................C................ GTAGACATAGACAGCAACCGTCAGAAGTCCCTT 2086714 37 97.3 32 ....................C................ CATGGTGAATCTGGCGGTATTAAACCCCCTTC 2086645 37 97.3 31 ....................C................ ATCGACTCCGATCCATCGCTGATAGATCTTT 2086577 37 97.3 35 ....................C................ CATTTACCGGATGAGTCGGCGTAGCGAATATTCGT 2086505 37 97.3 37 ....................C................ TCCAGAATATTGTCGATAAGGTTGACAATGAGAACGC 2086431 37 97.3 36 ....................C................ TCCCCCAGCGGCAACAATCTCCGATCGTTCGCCCGT 2086358 37 97.3 34 ....................C................ ACTCGATTGGCGGTAAAGTTCGTTTTGGCTGGTG 2086287 37 97.3 36 ....................C................ TGTGTCTGCGTCGTGTCGTCGGTGTGTCTGGATAAA 2086214 37 97.3 38 ....................C................ GAGATTAGACGACAACAAGACTTCAGCTTGGCACCGAC 2086139 37 97.3 34 ....................C................ ACCGCCCCCGACGACGGTGGTATGGATAAGCTAT 2086068 37 97.3 35 ....................C................ AGTGGTTGGTTTAGTAGGCTTTGAATCAAATAATT 2085996 37 97.3 32 ....................C................ CCTATCAACGATACCTAGATGCTAAATATTTT 2085927 37 97.3 35 ....................C................ TGGGATGAGATTTCTACACCCAAGCTTAAACCGCT 2085855 37 97.3 37 ....................C................ TGGCTATCAGTTCGCGCGGGGGGTGGAAAATGCCGTT 2085781 37 97.3 35 ....................C................ TAGACCATCCCCGCTCTAAATCCGAGGTAGTGCTA 2085709 37 94.6 0 ............C.......C................ | ========== ====== ====== ====== ===================================== ======================================= ================== 49 37 98.8 35 GTAGCGATCGGCTTTCGGGTTGATCGAGGATTGGAAC # Left flank : TCCGCAGTATCCACCGTTTATTTTGCGGGGTTAATAATGAATATTTTGGTGACGTATGATATTGCAGATACAGAGTCAAAAGCGGGGGCGAAGCGGTTGCGCAAGGTGGCGATCGTCTGTAAGGATTATGGTCAGCGAGTACAGTTTTCGGTGTTTGAATGCGAGATTGACCAGATGCAGTTTGAGGTGTTTCGATCAAAGTTGTTGAAGACGATCGATGTGCGGGTGGATAGTTTGCGGTTTTATAAGTTGATGGGGGGACGCGATCGAGCGGTGGAGGCTTATGGGGTGGATAAGTATGTTGATTTTAATGAGCCTTTAATTTTGTGACGCGAACCTCTAATGGTGTCTGTTTTCCTGGGAGGTTCGCGTTGCCTTACTGGGTAAGGGTTTAACTTGGTTGGCTTGATGTTTTGGAGGGTTGAGATGTTGTTAGTTTTTAGGGGTTCGCGTTGGAGAACGTTGAAACATTTGCTGTATATGGGTTTAAAATAGAAGCC # Right flank : CAAAAATAGCGTATTGAGTTCGAGGTAATCCTGGGCAGTGAACAAGCCGCACTAACGGCTCTCCTCGCATCCTGGGGTAAAATGTAGCCTAGGCTACATTTTACCCCAGGATGCTCACTATGGACTTTCATCTCAACTCTCTTCTGGCTTTAGAAAATGCCACAGTTTTTACATGTTATAAAGAAACAGATTTTATTTGTCTACACCTTCAGTTAAATAACGAAGGGATTAATTGCCCTAATTGTCAAGAATATACGGATTGCTTACACAATACAAGTTATCGACTGGTCAGAGATCTATCAATTTTTGGTAATTTGGTTTATTTAAAAGTGCCACGTCGAAAATACTATTGTAAATCTTGTGGTAGATATCCAACAGAAGTATTAGAGTGGGTAGAAAAAGGAAGAGGTTTTACTTGCCGATATGAAAATTATATCTATGCCCAAGTAAAAACTTTAACTGTCGAACAAGTTAGCAAGCAAGAGGAATTAGGCCGCGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGATCGGCTTTCGGGTTGATCGAGGATTGGAAC # Alternate repeat : GTAGCGATCGGCTTTCGGGTCGATCGAGGATTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //