Array 1 10524-11093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVZD01000004.1 Escherichia coli strain 12_ECOL 363_19811_340930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10524 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 10584 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 10644 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 10704 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 10764 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 10824 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 10884 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 10944 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 11004 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 11064 28 85.7 0 ....................A...C.CT | T,C [11084,11088] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 149563-147553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVZD01000007.1 Escherichia coli strain 12_ECOL 409_149959_2673559_7+,...,146_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149562 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 149502 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 149442 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 149382 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 149322 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 149262 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 149202 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 149142 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 149082 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 149021 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 148961 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 148901 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 148841 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 148781 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 148721 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 148661 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 148601 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 148541 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 148481 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 148421 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 148361 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 148301 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 148241 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 148181 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 148121 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 148061 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 148001 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 147941 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 147880 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 147820 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 147760 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 147700 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 147640 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 147580 27 92.9 0 .......................C-... | T [147561] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCC # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //