Array 1 8009-7827 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000105.1 Cylindrospermopsis raciborskii S07 NODE_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 8008 35 100.0 38 ................................... CGCACTAAATTGTGCTCCCACTCCCCCCCAGAGGGGAA 7935 35 100.0 39 ................................... CGATGAGACGAAACCCAAGAGGTACCTGGACTCCTGAGG 7861 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 3 35 100.0 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGA # Left flank : GTTATATGAAAAAGACTCTAATAAAGCACTACAACTCATTAATAAACTTAGAGCATTATACTTAAGTCAAAACAATATTATTGACTCAAGAGAAATAACTATAGAGCACTTAGATAAAATACGGACTTTACAGCCTAAAACTGACGAGGAATATAATAAACTAGATGGTAAACAAAAAAGAGAATTAAATACTAGAATAGAAGATTATTTATTAAGACTAGTTCTAGAAAAAGAAGATTTTTCTTCAGTAAAAGTAGATCCTTCTAGTAAAATAAATACCTTAGAAGATAGAAGAGAGAAAAACCTAAAAAAAATATCTTTAGGTCAACAAATACGAGCTACTATGATTAGACAAGGCGCTCCATTTGGTTCTTCATGGAGGTCTCGTACAGGACACGTTTTAAAAAGAGTTTTAAGTGACCGTAAACTGATAGAAAGAGGTAAAAAAACAGGCACTTACATAGTGCCAGACGAAAAAGCTATAGGTAACAACACTCTAG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTTATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTGAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTGAGATTTTTACCACCCTTGCGAGATTTAAATAGAGGAGACTCATTAGTGGTTTTATGCGACTTTAAAGATGCCCATAGTAAAGGAGGAATGATTAAAGTGCGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 12047-11129 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000105.1 Cylindrospermopsis raciborskii S07 NODE_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 12046 36 100.0 37 .................................... GTGCGGCTTGGTGTGAATATAGTTTACAATTAAAACA 11973 36 100.0 37 .................................... GTGTTAGTGGGGTTGGTGTTGGTGGTCATGGTGTTGG 11900 36 100.0 37 .................................... AGCCAAATGAACTCTGATTCTTGCTGCCTTTTAGTGA 11827 36 100.0 36 .................................... ATCTTCAATTACAGTGCCAGTACCACATCCCATCAT 11755 36 100.0 39 .................................... CATCGGGTTGACTTCCTAGGTCGTTGCCAACTATTTTCT 11680 36 100.0 36 .................................... TAAATAGATCTCTACCCGCTCTTAAGGATGTGGATT 11608 36 100.0 37 .................................... TTATTAAATTACTGTCTAGATGAAGCACGAGAAGTTT 11535 36 100.0 36 .................................... CAAAAAAGACAATCAGTCCATCTTGTTTGATCACAA 11463 36 100.0 39 .................................... TTCTTCGATGAATTTGTTCTCGTTTATGTTTTTACCAAC 11388 36 100.0 36 .................................... ACTTCTTAACCCGCTCATACCCCCCTATTCCCCTTT 11316 36 100.0 42 .................................... AAATTGGAAGAAGGAGTGGAAGTGGAAGAAGGAGTTTCCTCC 11238 36 100.0 38 .................................... AAACCTATTGACAAGGGAAACTTGACATGGTATATTGA 11164 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TGGATTTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTCATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGGACAGAGACT # Right flank : GCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGGAAGAAATTATAAAAATTAGTGAGTCTGTTCTCGAAGTAGGAAAAAAAACAGAAGATATTCTAAAAGAAGCTTTAAGAGAAGAAGCTAATCTTAATTTTAAAGAAGAGTTTATTAATAGAATAAAAGAAGACAACAATAATATAAAAAGTTTAAAAGCATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3668-1712 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000128.1 Cylindrospermopsis raciborskii S07 NODE_224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3667 36 100.0 37 .................................... TAAAGGTATTACTTTCATAAGAGGTATAGAGAGATTT 3594 36 100.0 37 .................................... CTAGTAGACCACGTAGTAAGTGTAGGTTGTAAATCGT 3521 36 100.0 42 .................................... AATGAAAGTTCCCATCGGGTTGACTTCCTAGGTCGTTGCCAA 3443 36 100.0 35 .................................... CAAGAACAGCATTATCCATGTCCATTTCATTTTCT 3372 36 100.0 42 .................................... ACCTCTTCAAGTATTTCCTCGATTTCACTGATACAACAGCGA 3294 36 100.0 39 .................................... GTGGTGTTGGTGGTCATGGTGTGGGGTTGGGAGTTGGTG 3219 36 100.0 40 .................................... TAAACGATAATAAACGATTAATACAAAAACAACAAATAAT 3143 36 100.0 41 .................................... AAAATATTTTCCAGTAAGTATTATTATTTTGAAGTGCTTCA 3066 36 100.0 37 .................................... GAAAATAGCACTTCTTTTTTGAATTTACTGTTTGTTT 2993 36 100.0 38 .................................... AAATCCTTGAAGGGAATGAATTTGTGCTAATCATTCCT 2919 36 100.0 39 .................................... GAATAGCCGGAAACAACCCGGGTAGAACGGGAATAGCCG 2844 36 100.0 38 .................................... AACAGTACAATTAGTTGTTTTGTACATTCTCTTGTTTT 2770 36 100.0 34 .................................... CAACGTAAATCGATTAACCCTTTTTTAACACAAT 2700 36 100.0 38 .................................... CCTCAAAATATTTTTCCTGGCTTTTTGAAACCAACTTT 2626 36 100.0 35 .................................... TGTTGGTGGGCATGGTGGTGTTGGTGGTGTTGGTA 2555 36 100.0 37 .................................... ATGAGTTCCAAGAAAGCATTTATGGTTGGGAAGTATA 2482 36 100.0 34 .................................... TTAAAAACGGCTTACGAATACAATAGCTTAACAA 2412 36 100.0 40 .................................... TATAGGAGCTAAAAGATATAATTTTTCAGAGTGTTCCCAT 2336 36 100.0 36 .................................... CCTCTTCCGTGAGGTTGATGAAATTCATTTTGGCAT 2264 36 100.0 37 .................................... TTTCATAGCTTCACTATCGCTTACTAGAAAGATTCCT 2191 36 100.0 38 .................................... AAGTGTAGTATCACATGATCCTCTTTCAAGATAATACA 2117 36 100.0 36 .................................... TATCGTATATACGATATTGGTCGTTATCTTCTTTTG 2045 36 100.0 42 .................................... AAGTAGAATCGAACACCACTGGTCGTTTGACCAGTGATTCTC 1967 36 100.0 39 .................................... CCAAGACAAATCTTTTAATTCATCTTGTCGACAGAAAGT 1892 36 100.0 38 .................................... AACCTCTGCATAGCAGAGACAGTCACAGAGGGGTTTGC 1818 36 100.0 35 .................................... CCGCTGGATTGTGGTGAAGAATGATAGAACTGCGG 1747 36 86.1 0 ........A.....................A..GCT | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 99.5 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AAAGCCATTATTGCAAGGATTTTGGCGTATACTTTTTAACTAAATGTAGTTATGTAATTTGGTATTATGTTTTATGATATTAAATCATAGCTATACATTTTTATCCAGACAATGAAATATACCTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGCTATTTACAATAAAAATAAAATATACATAATTTTTAAGGAATTATTTTGCTGTAAATGTGTTATAATATGGGGGAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGGAATAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACAGAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCTCACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCGGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1091-1937 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000148.1 Cylindrospermopsis raciborskii S07 NODE_274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1091 36 100.0 35 .................................... TCTGGGCCTCAGGATCCCTAGATATAAACACTTCT 1162 36 100.0 38 .................................... CAGTAAACCCTAGCCCAGAACACCTCCGGTGGCATCGA 1236 36 100.0 39 .................................... CTTCTTTCAACTTGGACAAGGTTTGGAAATCCAACAGTT 1311 36 100.0 42 .................................... GGATTTCCCTGTGGTTCCATCTCATATTCCCTCGGAGGAAGA 1389 36 100.0 40 .................................... CCTTTAGTTCCAGTAAACGATAGCCCCAAAAACCTCCGGT 1465 36 100.0 34 .................................... AAGAAGTCCACCACTGGAAACTCTGCGTCTGCGA 1535 36 100.0 36 .................................... TTAATTTAAGGAAATTACAGCAGAACTCTTCTAGTT 1607 36 100.0 36 .................................... AGGGGAAAAAAATGACTACAACAAATAAAAATACAG 1679 36 100.0 40 .................................... TACCAGGATTTATGGGTAGTACTCATAAATCCTGAATAAT 1755 36 100.0 37 .................................... TTATTTTCCGTGCCTCTACCCGACAAAATAAATGTTC 1828 36 100.0 38 .................................... CGGGGTTGTTTCCGGTCTACCCGGGGTTGTTTCCGGTC 1902 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 4720-588 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000035.1 Cylindrospermopsis raciborskii S07 NODE_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4719 37 100.0 36 ..................................... TAGACTTGACAAGACTAAGCGCTCTAAATTGTTAAC 4646 37 100.0 38 ..................................... GGAGGTAACTTCGATGGGAACACATCAGATATCGATAT 4571 37 100.0 35 ..................................... GTGTTTTTTAGAACATACAGCAGAATAACTGATGG 4499 37 100.0 43 ..................................... TCTACCTAAGTAGAATTCTGCAAAGCCAGGAGCATAGGCAATT 4419 37 100.0 39 ..................................... TTTGCAATCCGCACTCAAAAGCGCATACATCAATCTCTC 4343 37 100.0 37 ..................................... GAGAATATCCAGGAGGTGATTACTCCCCTCCTAGCCC 4269 37 100.0 37 ..................................... CCATTCATGAATTATTTCTGAGTGGCTCATATCTTCG 4195 37 100.0 36 ..................................... CCTGACAAAAATTGACCCAAGCATGTCATTAAACTG 4122 37 100.0 41 ..................................... AATCTCAGATAAAGCTTTTTGAGACTTCAACTCATTTACTT 4044 37 100.0 36 ..................................... GTGGAACTAAATCTCTATTAACTGGTGCTTCCCCTG 3971 37 100.0 37 ..................................... GAATATTGGTGATGAGTAACTGGACACAGTCCAGTTA 3897 37 100.0 33 ..................................... CTCAACCAACCCTGACTCAGGGTTAACAGCAAT 3827 37 100.0 38 ..................................... ATGGTAGCATGATTGCATCTATTGTAATAGGTGACTAT 3752 37 100.0 35 ..................................... AAAAATTCAGATTCTTTCTCGAACCACTTGACAAT 3680 37 100.0 39 ..................................... AAGAAGAAGAGGAGGAGATATACCAAAATGAACATTACA 3604 37 100.0 34 ..................................... TTTTTTGGCTATCCCGCTTCAATTCGTTAATACA 3533 37 100.0 37 ..................................... TTTTTTGCGTCTTCTTTCCGCTTTCCCTAGCGGTGAC 3459 37 100.0 37 ..................................... CCTGTTTTTGGGGATAGAGTGTTGTCGGTTGACAGTT 3385 37 100.0 36 ..................................... AAAAGACCATTTCATTAACAAATGTTAATGTGTCTG 3312 37 100.0 37 ..................................... TAATAACTGCCGGATGTATTTCTGTAGGCTTTCTTTG 3238 37 100.0 40 ..................................... TAGTGTATCCTTAACATCATCTATAAGCCCATTTGCTAAC 3161 37 100.0 38 ..................................... AGATAGCCATAAAAACCGGGTATTAGACAGCTTAATCC 3086 37 100.0 38 ..................................... TTGCCATCTTTGTTGTCTCTTATTACCAGTACTTACAT 3011 37 100.0 40 ..................................... CACTTTATCCACAAATAGAGATTTAATAGACTTTATTTGT 2934 37 100.0 36 ..................................... AACACAAATCAATAAGATCTGAGACTAACCAGACGG 2861 37 100.0 38 ..................................... GCGGTTTTAGGTCGTGGCACGAGCTAAAACCCATGTCC 2786 37 100.0 37 ..................................... CCGGTAAAGGTGTTATCTCTAATACTGGTTGATTATC 2712 37 100.0 41 ..................................... AATGGCTATATTAATGTCCCCTAGTGTCGCACTCGACCCGG 2634 37 100.0 39 ..................................... GATATGTAGTACCGTTTAGATATCCTGGTTCGATATTTT 2558 37 100.0 40 ..................................... CAGCGCTATAAGGATTAAAACTGTGAATGCACATTACAAC 2481 37 100.0 35 ..................................... GGAAAACTGATCACACTGTGCTTAAACATTTATTT 2409 37 100.0 38 ..................................... CCTAACACCGCAATCAGTCCTCACCACGCCCGATAATC 2334 37 100.0 37 ..................................... TCTATGATGGTTTCCTTAGCGGCGGGTGCATCCCGCG 2260 37 100.0 36 ..................................... TAGTCATTTTAGGAGCTGTATAGTAGTCCTCTATAT 2187 37 100.0 37 ..................................... CCAGTGGTTTAACAGTTTTATTGCCGAATAGTAGCCA 2113 37 100.0 37 ..................................... AAAAACTCTTGCAACATCTTTTTGTTAAGTTATCAGG 2039 37 100.0 41 ..................................... ATCGTGCCAAACTCTATTACTTCTGCTAACAAAATTATCAC 1961 37 100.0 35 ..................................... TAGAAGGATACATAACGTTTTCAATCAATGATTGG 1889 37 100.0 38 ..................................... ATCTTGTAAACACAGGATAAGGGTTGAGGGGTGGATAG 1814 37 100.0 37 ..................................... CACAAATAAAGTCTATTAAATCTTTGTTTGTGGATAA 1740 37 100.0 37 ..................................... GAGGCTTACTTTAGTTTATGTAAGTCTCAACCAAAGT 1666 37 100.0 37 ..................................... ACACTATAATTAATAGTGGTAACAGAAAAAAATCTAA 1592 37 100.0 34 ..................................... AGTGCGACATTATACATTTGACCGTTCCAATAGA 1521 37 100.0 36 ..................................... ATAACTTAGACAGCGTGATATCTCCGGTATTGATAG 1448 37 100.0 36 ..................................... TGTTGTCAATAAATAAGTTATATTTATCATTCAAAA 1375 37 100.0 41 ..................................... TTATATGGAGTTTTTTTCAACTTTCCTTATTTTGCAAGTGT 1297 37 100.0 35 ..................................... ATTTTGCAAGTGTTTCAGCCATTTTTGGGTTCCGT 1225 37 100.0 35 ..................................... TGAGGAAATCCATCACACTAACTACCGTAAATCAG 1153 37 100.0 42 ..................................... GCGCATAACTACCCATTGGCACTGGGTTCATTCCAATCACTC 1074 37 100.0 38 ..................................... TCACCCGTAAAATCTACTGGCAAAAAAAATCTAGTTTC 999 37 100.0 41 ..................................... TGTGGGTATTGATCCGTCTGGTCAGGGTAAAGATTACACTG 921 37 100.0 41 ..................................... CTCGAGAAAAAACAGGGATTAGACGCGGTACGCTCTAATTT 843 37 100.0 39 ..................................... TTTGCAAGCATTGTCATACCAAGATTTGTCATTCTACTG 767 37 100.0 35 ..................................... CTGTAGTTACGTTAGCACCACCTCCCGGTAAAGGT 695 37 100.0 34 ..................................... GCGTGTCTGTGTACCCGTTGCGACCAAACCAGAG 624 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 100.0 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAAAATTGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : TAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAGATATTGTTATTATTGATACAAGCTTATCGCCAAGTAAAACTGTCAAAATTGGCGAGTTTGTTTCCCCAACCAATTAAATATGAAAGCAGGAAACGTAATTTACAAAGATTTTTAGGAATAAATAAACTCTGCGTAAAATTATTATGGTTTCCCTTGATAAAATATTGGATTAGACAATCGTTAACACCACAACAATTGAATCGAGAACAGCGCCGCTATTTTCATAAAAAACAATAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 9171-10903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000078.1 Cylindrospermopsis raciborskii S07 NODE_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 9171 36 100.0 38 .................................... TACTTAGAATTAGAATTAATCAACTTTGCTCCTTTCGA 9245 36 100.0 39 .................................... TTTTTCAAAAGTCCTAGCAGAAGCGCAAGAGCGTTATGC 9320 36 100.0 36 .................................... GAGGAACGGGAGTATGTTTACTCAAAATCTCTTTTA 9392 36 100.0 39 .................................... TGATGTTAATCCCCTAAAAGGGGAAAGGATAAAAGAGAT 9467 36 100.0 37 .................................... TTTATGAAGTACTTTGAAGTAATCATGTTTATGTTTA 9540 36 100.0 38 .................................... CTGAAACTCCACTTTTTCAAGTAGAATCCATCGAGCAA 9614 36 100.0 37 .................................... TTTAAACTTTTTTGTAAAAGCACTACTCTTACTCGTT 9687 36 100.0 40 .................................... AACGCTAAATACAACAAGTAGCAACACTTGATTTTATAGT 9763 36 100.0 36 .................................... TAAAAAACAGATACCAGACATCACAACAGATAGTGT 9835 36 100.0 37 .................................... TCATGTAATTGGCAGTCTTTGGAAGACATTAGCTCAA 9908 36 100.0 39 .................................... TACTGATATGTTAACTTGGTATGTTATAGGACAAAAATA 9983 36 100.0 36 .................................... GCAATCTCATTCGTAAGCTTAACAGAAGTATGATCT 10055 36 100.0 38 .................................... CCCACAACCTTGCGGACGTCCTCTAAAATCTTAGAATC 10129 36 100.0 44 .................................... CTATGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCAGC 10209 36 100.0 40 .................................... GGACATCTGTTCAAGGGCAACATTAGTGTTAAAAATTTAG 10285 36 100.0 36 .................................... TGGTGACAAACCTTAATGGGACGGAGCCCTTTACTA 10357 36 100.0 36 .................................... CTGCGGAGGAGAAGAAGACTTTTCAAAATAATTAAT 10429 36 100.0 39 .................................... AGCTTCTATCACATTATACTGTGAAAAAGCTCCACCGAA 10504 36 100.0 37 .................................... CACCTTGTAGAGCCCTAGCTTAGAAGCTAGAAGACCT 10577 36 100.0 38 .................................... AAAACCAAATCAGAAACCTGGTTTCTGTTAACCAGGCA 10651 36 100.0 35 .................................... AGAAATAGCGGGGTTCTAAAGAAGCGCAGCGGTAG 10722 36 100.0 35 .................................... AGTATTTTGCTAACCCGTTGGCGGGTTATACCTAA 10793 36 100.0 39 .................................... ATTATTACTATTTATTTGATAGTATGTATCCTTATAATG 10868 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 24 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : GAAAAAGTAATAGAGCTATAGAGGGTGGGGTAGGGGGGTTTCCATTGATTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 17681-16982 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000038.1 Cylindrospermopsis raciborskii S07 NODE_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 17680 36 100.0 37 .................................... GCGATCGACCCGGACTGGCTCACTTCCGCTTCAAAAC 17607 36 100.0 39 .................................... CGGCATCCCAGAGGAAGACCTTGCTGGGATTAGCATCAA 17532 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 17459 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 17388 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 17312 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 17241 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 17169 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 17092 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 17017 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATAAAATATACTTTTAAAGTTTTGCACCCGGTGACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAGGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : ACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2002-184 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000320.1 Cylindrospermopsis raciborskii S07 NODE_721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 2001 36 100.0 40 .................................... AGACAAAACTATCAAGGCTGTCTATAGCTATTCTAAAGAT 1925 36 100.0 34 .................................... TTTTCAACAGGCTCACAACCATCAACTGTTACAG 1855 36 100.0 39 .................................... TAAAACATCAAAATGAGTTGTAAATTTCATAGTAATAAA 1780 36 100.0 34 .................................... GTAATGAGTTGTATTTAAATGCACAGTTTTTGAA 1710 36 100.0 50 .................................... TTCTTGCGCAGCTGCCCAACCCGCATTTTTCTGTTCTTGACTCAAATAGT 1624 36 100.0 39 .................................... AATATTTGATTTAATTGACAAATCTTTAAAGGAGAATAG 1549 36 100.0 39 .................................... AATATGGGTTTTTTACAGAAGGGTTTTCTATTGTTAGAT 1474 36 100.0 37 .................................... TTACTGTAGATGCTGTCGCAGTTACGGTAACCACGCA 1401 36 100.0 39 .................................... AAATATTGTCTCAAAAGTATTGACAAACCAAAAAGACTA 1326 36 100.0 39 .................................... TTTTTAATTATTGGTTTTGTTTTACTATCATACTTTATA 1251 36 100.0 37 .................................... GAAACAGTGCTAGTGGTTAATCGGAGGGTTAATACCA 1178 36 100.0 39 .................................... AGTTTCCAGTGATCATTATTCGTTTGTAAGGCAGAGTCT 1103 36 100.0 46 .................................... TGTTGCAAACAGTGTTATATGTAGGTAAGAAAAATGATGCTTATAG 1021 36 100.0 37 .................................... TGGAGAGTTTAAGCTCCACCAAGGCGGCGCGGTACAA 948 36 100.0 35 .................................... AAGGAAAGGCGTTCGATTTCCCCAACCACCCTCTT 877 36 100.0 38 .................................... GAGCTGCGCACCATATAACTTGGGGTCACTCCCAATTG 803 36 100.0 39 .................................... GATGGTATTTAGTTTACATGTCTTGTAAGTGTTATTTAC 728 36 100.0 35 .................................... CTAAAAGATCATGTATTGCGTTTCTCTCGTTTCTG 657 36 100.0 37 .................................... AAGTAATCGATGACTGACTCTAATGAGTCGAAGTCAC 584 36 100.0 37 .................................... TCTGGGCGTTTTAGCGTTTTAGTAATCGCTTGTTCTA 511 36 100.0 42 .................................... GGCTACAATTAACAGGAAGTTATGTAAATGGTGTATTAGGTC 433 36 100.0 34 .................................... CTGAGGCGTTGCAGCGTTATCGGGGAAGAGCTTA 363 36 100.0 37 .................................... TAAAAGGACAGAAAATAACAAATCTTTTTTGAATTTA 290 36 100.0 35 .................................... AGAAGAGGAGGAAATATACCCAAATGAACATTACA 219 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 25 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTAGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CGTGCTTATAAGGATCAAAGTTACAAAGGAGTGACAGAGACCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2471-167 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000372.1 Cylindrospermopsis raciborskii S07 NODE_872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2470 36 83.3 35 T.....CCG..AG....................... TTCTCAAAAGGACACCAGTGTCTTGTGAGTGAGTG T,A,G [2458,2464,2467] 2396 36 100.0 38 .................................... GATTTTATAAGGTCTCGTTTTTCTCCTATAGGAGATAG 2322 36 100.0 37 .................................... CTGGATTTTCGTCGAGGAATCTTTCTACTAAGTCCCC 2249 36 100.0 37 .................................... TTAAAAAAGCAGCAAGAGAAAACTACGAAAGAGGAAA 2176 36 100.0 36 .................................... TCACGCGTTAAATCACGCGCGACACATATCTCTTTG 2104 36 100.0 40 .................................... TATCTGTTATCCAGTGGAGAGCTGGAGGAATGGTTAGGGG 2028 36 100.0 38 .................................... CCAAAATGCACTTCCTCCACCTGACGGAGAAGGTAGTT 1954 36 100.0 33 .................................... GGCGTCGGTTAACTTACGCTTCTCTTTTGTCTT 1885 36 100.0 36 .................................... AATGACTCAGACGACCCCGCGCTTAAATCAGTAAAA 1813 36 100.0 44 .................................... TCGTCAGTCGCAATCCCGAAAGGATATCGCGTAGTTACCACAAA 1733 36 100.0 37 .................................... GGTTGAGGTTAAGGTTAATGAGCTCACTCCCCAGGAG 1660 36 100.0 47 .................................... TAACCTTTCAGAGGACACACTCATTGAGGAGGAGTTGAGACTCCTCT 1577 36 100.0 73 .................................... GGTGTGAAAGTTGTAATACGTCCAACCATCTACAGAACTCCATTTAGCTGGATGAAACTCACCATCAATCTTA 1468 36 100.0 38 .................................... TTCATAACCCTATTGAGGTACATCCTCAAGCTCAACAA 1394 36 100.0 38 .................................... ATCATAACAGCGTAGGATGAAAAGCGCGGAGTTGACGA 1320 36 100.0 39 .................................... TAAAGAACAAAAAAACCCCATCGAAGCTCTTGCTTAGAT 1245 36 100.0 37 .................................... CTACTCTTAATGGTATATTAAACGTTCAAGTAGTGTT 1172 36 100.0 37 .................................... TGTCACGTGGATCCACGTGACACTACGGGTGGCTAGC 1099 36 100.0 42 .................................... TTTAAGTGGGGTTGACTCTCGCGCTATAGCTGCATTGCGCAG 1021 36 100.0 37 .................................... AAGAACAATCTCTTATCCAACTCCGCTACTCCACTCT 948 36 100.0 37 .................................... TTTCTAGGAGTTCAAGAAAGGTAAGAGTATCAATCAT 875 36 100.0 38 .................................... TCTTCCGCTACCCCTTCAAAGTAGTTCCAGCCAATCTT 801 36 97.2 35 ...................T................ AAACTATCTCCCGCTACCGTGCTGAAGCACGCCCT 730 36 100.0 40 .................................... CCTTGTCCAAAGCTTCTGTGGGGGTATTCAGATTGTCCTG 654 36 100.0 48 .................................... GCCCGTCCGGGTCACCTACCCGACCGATTACGGCAAGTATAAAACCGA 570 36 100.0 34 .................................... CTGCATACGAACTGCTCAAGTGAAAACAAAAAGG 500 36 100.0 41 .................................... GTTGGAGCTTTTTCACAATATAACGTGATTGAAGCTCGTCA 423 36 100.0 37 .................................... GCAGTATTAGAGTCTGTTTTGTTTTCCTTATCTTCTA 350 36 100.0 37 .................................... GATCAGTGCAGGAGGGGCATCCTGTACGTTAAATATT 277 36 100.0 39 .................................... TCGCGTGAGCGAAAGTCGCAGCAGAGCAGGGTTCAAAAA 202 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 99.4 40 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : AAAGTAAATGAAACTCGTTTTTTAGCCTTAGTTTTATTAATTGTGATTGCTTATAGTTTAGCCACTATGTACGGTCAACGGATGAAAAAATTAGGGATAGAGACTTATGCCGGACGGATTCAACAACATCAGGACAATTACCCAAGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTACGGCATGGAATTATGGGCTGATTTAGCTCTGACCTTAATCGGTCTCAAACCTCATAAACGCCTCTTTTTCCAGCGTGGCTTTCAGGCTCTATCCCTTATTAAACAAGCTGTTTGACCA # Right flank : TCCCTCCATTTTAAGCCCTTGCTCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 558-1194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000006.1 Cylindrospermopsis raciborskii S07 NODE_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 558 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 636 37 100.0 38 ..................................... TTTGGTATCGTCTATTGGGACAATACCCAAATTTTCGC 711 37 100.0 37 ..................................... TTATCGTTTTTACTCGTAGTTGTTTTTGCCTTGCCGT 785 37 100.0 39 ..................................... TAAAGGAGAGTTTTTCAACATTTTCAATATCAACTATTT 861 37 100.0 35 ..................................... AAAATATAACTACATTGCGTAGGTATATTCCAACT 933 37 100.0 36 ..................................... TCCAGAATTGAAAAAGTTTGCGGTTGAAAATGATTT 1006 37 100.0 38 ..................................... TCCATTACTGTTGGTTTTTTTGTATCTTTGGGGGATGA 1081 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 1158 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : ATGCTTTCAGGGTATTCATTTAGTTGAATATAACAATGAAAAACAAGTCTCTAATTGGACTAAAGATAGAGATTTTATCTTGAATCTTTTGCCAAATGATTGTTTACGTTATTATCGATTAGTAACTTAATTATTCTCTCTACCAATTTAATTTATCATGTTTAAATGAGCTATTTGATTTACAGCTCCATTTTGCTATGTCTATAATCTTGTTTTTACCCTGGAAAAATTAGTCTATTTTATGATTTTACCTTGAATATCTTAATTTTATTTATTTGTTCACCTCTCTGGGTAATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGA # Right flank : CTTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 42201-43464 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHX01000008.1 Cylindrospermopsis raciborskii S07 NODE_12, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 42201 36 100.0 37 .................................... ATTCAAATTGTCCTGCGCGATCGCCTCAATGCGCCTG 42274 36 100.0 36 .................................... TAAAGAGGAAGGCTTTATGAGGGCCGTCCCTCTCAA 42346 36 100.0 35 .................................... GGGCAAATAACGGAGGGATCGAAGTGGAGGATTAC 42417 36 100.0 36 .................................... CCTTGCTTAGATGGGGTTTTTTCTTTATCTCTTTAC 42489 36 100.0 39 .................................... CCCCTACTAGTCTTTCTCTACCTCGCATGGTTTAACTTA 42564 36 100.0 34 .................................... AGAGCTAATAAGTCTAATAACTAATAATATAGAC 42634 36 100.0 37 .................................... CTCGTAAGTCTTTAGTTTACTATCTACTTTAGCCTTA 42707 36 100.0 36 .................................... GCAGTTAGAGTTAGGATCATCTAGATTATCTAATAC 42779 36 100.0 37 .................................... AGGTTGGGGTTGGTGGTGTTGGTGGGGTTATTATTCA 42852 36 100.0 39 .................................... AATCAATCTCTATTACAGGTGGAGTTATAGGAAATATAG 42927 36 100.0 39 .................................... AGGAGTTACCTCAAGAGGAGTTACTTCTTGAGGTAACTC 43002 36 100.0 37 .................................... TATAGTAGGTACCAGCAGCGGGTACAGGGCTGTAATA 43075 36 100.0 32 .................................... GTTAAATTCCCCACTGCTAACTTCTCCCATTG 43143 36 100.0 35 .................................... AGGTAGCCGCGCGGCTACCTTCAATAATCAATCTC 43214 36 100.0 35 .................................... TCTCGTACCAGTCCTTATCCTCAAGTTTCCAAGCC 43285 36 100.0 35 .................................... ACGTTGATTATTGTTGGAACTCTCATAATTTTATT 43356 36 100.0 37 .................................... CCCCCTACCCCACCCTCTATAGCTCTATTACTTTTTC 43429 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 100.0 36 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTGTCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGTTAGGTAAAGTTTTAATCTATATGATATTTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGGATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAGTAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : CATTATAAGGATACATACTATCAAATAAATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //