Array 1 6-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKN01000047.1 Campylobacter fetus subsp. testudinum strain wqj4 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 6 25 100.0 41 ......................... TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATAGTTTA 72 25 100.0 40 ......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTCGTTTG 137 25 100.0 41 ......................... AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAAGTTTG 203 25 96.0 41 ..........G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTAGTTTG 269 24 92.0 0 ..........G.............- | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 97.6 41 CTAATGACAATATTTGTGTTGAAAC # Left flank : GTTTGC # Right flank : | # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 726-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKN01000015.1 Campylobacter fetus subsp. testudinum strain wqj4 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 725 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 659 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 593 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 527 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 461 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 395 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 329 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 263 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 197 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 132 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 66 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 99.1 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CTAGACCTATATTTCGTAAATTTATAAAAGATATGGT # Right flank : CTTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 293915-292167 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKN01000001.1 Campylobacter fetus subsp. testudinum strain wqj4 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 293914 30 100.0 36 .............................. TTTTTTTTACTATAGCCCAAATAGCCGCTATTACGG 293848 30 100.0 36 .............................. TAAAACAAAAACAAAGGCTAAAATGATATACACAAG 293782 30 100.0 36 .............................. ACTACAGGTACATTAGATATTTTTAAATCTAATGTT 293716 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 293651 30 100.0 35 .............................. TTAAAATACCTTGACAAGTCTAAAATTTTATACTA 293586 30 96.7 36 .............................T TTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 293520 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 293453 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 293388 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 293321 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 293255 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 293190 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 293125 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 293061 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 292996 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 292930 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 292864 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 292798 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 292733 30 100.0 38 .............................. TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 292665 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 292599 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 292532 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 292466 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 292400 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 292329 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 292264 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 292196 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 27 30 98.2 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ATATTTGTGTTGAAACTATTACTAGTTATATGGCTAGTATATCTGCTTCC # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAACAAATATATAAACGCCTTTAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1974-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKN01000016.1 Campylobacter fetus subsp. testudinum strain wqj4 contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1973 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 1908 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 1842 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 1777 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 1711 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 1646 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 1579 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 1513 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 1447 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 1382 30 100.0 36 .............................. AAACACTACACCACCAATTACCCCTAATAACACTCT 1316 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 1249 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 1183 30 100.0 36 .............................. ATATCTTTTACATTTTTACCATCTGTTGCTAAAATA 1117 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 1053 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 987 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 921 30 100.0 35 .............................. TTTTTTATACTATTTATAGAAGCTTTTTGAGCATA 856 30 100.0 36 .............................. AAGTTCATTCGAGCGATATTAGAGCTCCGCTTCCAA 790 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 724 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 658 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 592 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 526 30 100.0 36 .............................. CGTTCAGCTTCCATTGACAAACCACCTTTTAAAATA 460 30 100.0 36 .............................. TTTCTTGCGAGATCATTTACGTGGCATGGGCTTATA 394 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 328 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 262 30 96.7 36 ...............G.............. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 196 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 131 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 98.9 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TAGATTGATATTTGACGGGAAAAATCTAAGCAC # Right flank : CTTGTACACAGGGTATGTAAGATCTGTTGTAATCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 4160-4714 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKN01000024.1 Campylobacter fetus subsp. testudinum strain wqj4 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4160 29 100.0 37 ............................. AATAAGAGGATTGTCTGAAAGATTTGGGGATGAGCTA 4226 29 100.0 36 ............................. CCTGCAGGCTTGTTTATTACACTAAGCGTAACTGCA 4291 29 100.0 37 ............................. TAAATTTTTATATACTCTTTGGGGTGATTTAAAATTA 4357 29 100.0 36 ............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTTA 4422 29 100.0 37 ............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATCG 4488 29 100.0 37 ............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTAG 4554 29 100.0 37 ............................. GCTTGGCGACAAATATGAGTACGAAACAAAGGGACTG 4620 29 100.0 37 ............................. GAATTTCGGATCTAAAACACCAATAGCTCCTCCAAAG 4686 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 37 TTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTATTTAGAAGTGGTAGAATAGGCGTTCGACAAG # Right flank : CTAAAAAATGAAAGTGAATACCAAACATTCGCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKN01000046.1 Campylobacter fetus subsp. testudinum strain wqj4 contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1 31 100.0 34 ............................... TCTTTTTTTAATACGACTAGCTATCAAGTCAGCT 66 31 100.0 34 ............................... TTATACGAGAAGAATAATACTCTCTTTCTTCCCA 131 31 100.0 35 ............................... CCGGATGAGTTAGACGCCCTAGCTATGCTTTTTTA 197 31 96.8 34 ..............................T ATCTAACCTCCTTTTGTTTTTCTTGCCTCATATT 262 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 34 GTTTCAACACAAATCTTGTCATTAGCAAACC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATCTTGTCATTAGCAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //