Array 1 141058-139504 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKUJ01000001.1 Streptococcus agalactiae strain 7H8O scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 141057 36 100.0 30 .................................... CAAATTATGGAGAATTATTAAAAAGTCACG 140991 36 100.0 30 .................................... TGCTCTATCCAGAATCAATCCCGAACGATT 140925 36 100.0 30 .................................... AATATTTCCCAAGCGAAACACCGATTATTT 140859 36 100.0 30 .................................... TAGCTATTTCTTCTTGCGTCATTGACACTT 140793 36 100.0 30 .................................... CTAGTGGACTACAAGTTAGGAGGATAAATT 140727 36 100.0 30 .................................... CAATATGACATTAGCTTACTTCACAAAATG 140661 36 100.0 30 .................................... CATAAATTGTACTTTTGTACTTTGGCAGTA 140595 36 100.0 30 .................................... GTTCTAGAAGGCCTCTATCGAGATTTCTTA 140529 36 100.0 30 .................................... TCTGACACCTGTCGAAATCAGAAAAATTTA 140463 36 100.0 30 .................................... GGGTTTCCAGACCATGCGCCACTAGAGATA 140397 36 100.0 30 .................................... AATCAAAAAGATGCTTTAAAGATTGGTGTT 140331 36 100.0 30 .................................... CTTGACCCTAACAATGATTATAGCCATAGA 140265 36 100.0 30 .................................... TGCTACAGGTGGTTACTTAGGTGCTGGCTT 140199 36 100.0 30 .................................... ATACAACCATTGATCTTGTATCAAAGGGTT 140133 36 100.0 30 .................................... TTCTGACCCCTCTCCTTTCCACTCCCACTT 140067 36 100.0 30 .................................... TACACGCTTGTCAAATTCAGCTTGTTTTTT 140001 36 100.0 30 .................................... TCGATAGAGAATGTGCTATTTTTTGTCAAA 139935 36 100.0 30 .................................... TAAAAAATACCAACTATCAAAAGTGATAGT 139869 36 100.0 30 .................................... AAACCACTTGATGCTGTATCTCTCATAAAA 139803 36 100.0 30 .................................... ATTGTGATACAGATAGTTTATACCTAAAAA 139737 36 100.0 30 .................................... TTATTCTCAACAGTAGCTAAAGTTGCTTTT 139671 36 100.0 30 .................................... AAAAAGAGCCAGAAACTCAATCAGAAGAAA 139605 36 100.0 30 .................................... TGGTGTTGGCTGTTCTGGGATGACTACGTT 139539 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCATCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATATAGAGTTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATATGAAAGACTATAATTCCAACCTTATTGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGGATCTCACCTATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //