Array 1 64569-63870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMGH01000020.1 Escherichia coli strain MOD1-EC5975 MOD1-EC5975_20_length_90101_cov_30.8737, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64568 29 100.0 32 ............................. ATTTTGGGGGGCAACCAGGCAGATGAAGTAAA 64507 29 100.0 32 ............................. GCCTGTTTCCTGACGCTGGCCGACAGTCGGCC 64446 29 100.0 32 ............................. CCGGCGCGCTGGCGTCAGGCGTTCCAGTGGTG 64385 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64324 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64263 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64202 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64141 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64080 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64019 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63959 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63898 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48729-49916 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMGH01000029.1 Escherichia coli strain MOD1-EC5975 MOD1-EC5975_29_length_50095_cov_30.9668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48729 29 100.0 32 ............................. TAATACGCATCTCATTCATTGTGCCTTGTCGA 48790 29 100.0 32 ............................. TCCACGTAGACCCTAAAACAGGTAAACGATTA 48851 29 100.0 32 ............................. TCGACAGTGAATTGCTTGCGCAGACGCGTGAA 48912 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 48973 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 49034 29 93.1 32 ..A.........................T AGATCGCGCCACGAGGAAACGAATATGAACGG 49095 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 49156 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 49217 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 49278 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 49339 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 49400 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 49461 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 49522 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 49583 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 49644 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 49705 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 49766 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 49827 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 49888 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //