Array 1 364732-365610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607752.1 Micromonospora rifamycinica strain DSM 44983 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================ ================== 364732 28 100.0 34 ............................ CTGCGAGGTTCGGCCCTACATTGCATGCCTTTCT 364794 28 100.0 33 ............................ CACCTGGCCGACGAGGACGCGCTCGTGCGGGGC 364855 28 100.0 33 ............................ CGACCTCGGTAACGGCCTCTGAGCAGGGCGGTA 364916 28 100.0 33 ............................ GGCGGGCCTGGGGACGTCCCAGATCCTCGGCGG 364977 28 100.0 33 ............................ GTCGCACTGACCCTGCGTGCAGCCCCAACCGTC 365038 28 96.4 33 ...........A................ CGATGGGCATTCGGTGCTGCTCGACGACGCGGA 365099 28 100.0 33 ............................ GGTGTTGTCCGCGCCGGCCGCCGACAGGTTGAT 365160 28 100.0 33 ............................ CGACCCCTGCAAAGCCATCGAAGCTGCCCTAGC 365221 28 100.0 33 ............................ CGGGCGGAACGCGGTCAACTCGGCGGCCGGCAC 365282 28 100.0 33 ............................ GCATGTCCGGGTCTGGCCGGACAACCTCCACGG 365343 28 100.0 208 ............................ CTCGGACTTCTCGGCCGACCGGGAGAGGTTCTTTCTTCCCGTCGTGCGCGGGGGCGTGGTGTCGATGACCATCCGACCCCGGGTAGCCGTCGTGGGGGAGTCCTCGTTGACCCCCCACCCGAGAGGTCGTGAGCTTCCTTCGGCCCGCCCCGCCGGGAGCGACCCCGTTGATCATCGACGGCCGTCAGCCCGCGCCTCTGACGGCCGC 365579 28 82.1 0 ....A....C....G......T.....A | A,TTT [365583,365588] ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================ ================== 12 28 98.2 49 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : AGGCGCTCCCTCGTGGACGGACCCTCGATCTCCTGAGAGAAGCGGCTGCATCATGGACCTGACCGGGGCGCGGTGGCACAAGAGCACGAAGAGCGGCGGCAACGGTGGAGACTGTGTAGAGGTCGCGGGGAATCTACCCGGTGTCGTCCTGGTGCGGGACACCAAGGACCGTGACGGTGGGGTGCTCGTGTTCACTCCGGCGGCCTGGCAGGGCTTTCTCGGCTTCGTCGGCCGGCAGGAAGTGGCTGCACCGTGGACCTGACCGGGGCGCGGTGGCACAAGAGCACGAAGAGTGGCGGCAACGGTGGCAACTGTGTGGAGGTCGCGGGAAACCTGCCCGGCGTTGTCCTGGTGCGGGACACCAAGGACCGTGACGGTGGGGTGCTCGTGTTCACTCCGGCGGCCTGGCAGGGCTTCGTCGAATTCGCACGCGAAGCGGCGTGCGCCGACAAGTGAAGTAAATCCAGCTAGTTGATCTACAGCGCCCCAGCTCAGAAAGC # Right flank : ACCCCCGTTGACCTGGCCGGATGTGCCGGGAACTGGACACCGGGGCCACCACGCCCGGACCGGGCAGCTTTTTCCGGCCGGGTTCGCGTACCGTTGCCGCTCATGGGTGTGTCGCAACGGTTGAAGAGCAGGTTCCGCCGGTTCCTCCAGCGCCCGGGGACGACGGTCGACCTCGCTCCGCTGGAGAAGCTGCTGCCGCGGGTCGCCGCGCGCGAGGACGAGCTGTCGGCGCTGGACGACGCCGCGTTGACCGAGGCCGCCGGTGCGGCCACGGAGTACGTGGAGATCTGCGCCGTCGGCCGGGAGGCCGCCCGTCGTGGCCTCGACCAGCGGCCGTACGACGTGCAGCTGCTCGGTGCGATGGCGCTGCTGTCCGGCAAGGTCGCCGAGATGGCCACCGGTGAGGGCAAGACGCTGACCGCCACCGTCGCCGCCTACGGGCACGTCCGGCTGGGCAACGGCCCGGTGCACGTGCTCACGGTCAACGACTACCTGGCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 6955814-6959239 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607752.1 Micromonospora rifamycinica strain DSM 44983 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6955814 37 100.0 37 ..................................... CGCGATCGTTCGCCAGGTCGACGGGTATACGTAGAGC 6955888 37 100.0 38 ..................................... CGCATTGAGGCACAGTGCGATGTGCGGGTAGTTGCCGG 6955963 37 100.0 38 ..................................... CACCTGACCCTGCTGCACTCGGACGGGCCGGTCGTGGA 6956038 37 100.0 37 ..................................... GCGGGGTGTATCTCGGCCGCCAGCCCCCGCCGACCAG 6956112 37 100.0 37 ..................................... GACGGTGGACAGCACGCCGTCGGCCGTCACTGCCGGG 6956186 37 100.0 35 ..................................... ACCCGGCCGGCGTCGGGGTGGGTGCAGGTCCGCAC 6956258 37 100.0 36 ..................................... ACCCAGCTCGCCGACGACCTGTACGGCGAGGGCCGG 6956331 37 100.0 36 ..................................... ACGTTGCGCCGGACGTAGGCGTCGTGCAGGCACAGC 6956404 37 100.0 37 ..................................... CTCGGGTGGTGGTTACTGGTTGTCGGGGGCGGGTGGG 6956478 37 100.0 36 ..................................... CGGTCCGTAGATGTTCCCGTCGGCGTCGGGTACCAG 6956551 37 100.0 38 ..................................... GCCTTGATCAGCCCCCACACGACGGTGCTCCGGCTGGT 6956626 37 100.0 38 ..................................... CGCGCTGGAAATGCACGGACAGGGGGCCGACCGAGCAG 6956701 37 100.0 37 ..................................... CGCCGGCGGCGTGGTCCCGCACTCCCGTGGGGTGCAG 6956775 37 100.0 36 ..................................... TTGCCGTGCTCATGGTCGGCACCCTCTGGCGTCTCG 6956848 37 100.0 36 ..................................... GATTTACCGGAACGCTTTCGACCGGCACAGAAAATG 6956921 37 100.0 35 ..................................... CGCCCGGTGTCCGGCAGTGCGGCGAGGAGCGATGG 6956993 37 100.0 37 ..................................... CCCGGCCTCGTCCGCCTCCCGGATGGCCTGGTGAAGT 6957067 37 100.0 35 ..................................... GCCATCGCCCAGGGCATCGACGACGGAATCTTCGG 6957139 37 100.0 36 ..................................... CGGGTGTCTCGGTGGAGCTGACCGCCCGCGTGGTGG 6957212 37 100.0 38 ..................................... AGGTACGCCCGGATCACCGTGGTCCGGTCGATGTCCAG 6957287 37 100.0 36 ..................................... GGGTCGGTGCGGATCTCCTCGGCCGTGTCCTCCCTG 6957360 37 100.0 37 ..................................... TCCATGGGGTGCCTCCAGGTACGACGGAGCCCCGACG 6957434 37 100.0 38 ..................................... GCGGCGGTCTTCTCGCCGATGCCGGGCACCCCGGGCAG 6957509 37 100.0 38 ..................................... CAGCGCAGCAAGGTCGCTCTGCCCCCGCTCGGCGTGAA 6957584 37 100.0 36 ..................................... GACGGCTCGGACATGACCCACGAGTGGCGGATCATC 6957657 37 100.0 37 ..................................... ATCGAGTCGCCGAACGCGTTCATTCCCGGCGAGGGGT 6957731 37 100.0 36 ..................................... CGGCAACGCTTCGGCGAGGAACGCCCGGAAGTCGGC 6957804 37 100.0 36 ..................................... GGCGCGGCGGCTCTTGGTGGTGTACTCCGCGATGAG 6957877 37 100.0 38 ..................................... CGGTCCGGACTGCGGTGACTGTCCCGAAGGCGCGGAGG 6957952 37 100.0 36 ..................................... CGCATGCAGCCAGCCCAGAAACTGGGTCCACTCGGC 6958025 37 100.0 35 ..................................... CAGATCCTGGCCGGCTTCGGCACGGATGGTGACGC 6958097 37 97.3 36 ................A.................... GAGTAAATATCGTCCCGGATCAATCCGGTCCCTGCG 6958170 37 100.0 38 ..................................... ACGATCCGCCCGGCCGGCACGCCGGACCGCTAATGCTG 6958245 37 100.0 37 ..................................... TTCGCCGCGTTGAACGCCGACGCCGCGAGGCTGGCAG 6958319 37 100.0 39 ..................................... TGGGATCAGGAGACGGGCGGCACCCGCTACGTGGATCTG 6958395 37 100.0 37 ..................................... ACGTCCGTCGGGGTGGTCGGCGCGATTAGCCTGATCG 6958469 37 100.0 36 ..................................... CATGACCAGCGCGACCGCCCGGGTATCCGGGTGCAG 6958542 37 100.0 38 ..................................... TCCGGGTACCGAACCCCCGAGTCGATGTCGGCCAGCTC 6958617 37 100.0 36 ..................................... ACCGGGACTGCGTTCCGGCTGGCGTCGTCGACCGGG 6958690 37 100.0 36 ..................................... CCGGCCCCGGCGACGGCGACCAGGACCAGGGACTTC 6958763 37 100.0 38 ..................................... GTTCGGCTGATCACCCCGACCCCCCGGCCGCGCACGAA 6958838 37 100.0 38 ..................................... TCTCCCCGAAGGGGTGTGAGCTGCGGAAATGGTCAAGG 6958913 37 94.6 38 ............T............A........... TCGGCGGTGGTTGACATGGCACCCTCCACGGTTGCCGG 6958988 36 97.3 35 .....................-............... ACCCGACAGGTCACCGTGCCGCAGGTCCGGGGCAT 6959059 37 100.0 35 ..................................... ACCGCCACCGGCGGCTACCGTTACAACGAGCTGTC 6959131 37 97.3 35 .....................A............... GCGGACAACGTCCGGGCGGTGGCCCTGGCCATCAA 6959203 37 78.4 0 ........TA...GA.....T........T....GG. | ========== ====== ====== ====== ===================================== ======================================= ================== 47 37 99.3 37 GCTGCGCCCGGTCTGCGGACCGGGCGAGGATCGCAAC # Left flank : CGGGCAGCCAGGTGTCAGCGGCGGAGATGCCGAGCCGGTTGAACAGGAGCAGAAGGTGGTGGGTCAATACCTCACGTAGGCTGCGGGTCAGCGCGCCATGCCGGTCGAGCAATCCAAGATCCTCGCCCGCCTGATCGTGGTTTTTCGGCCATTGCGGGGTGACGGCCAGTGGACTTGCGGTCGTGCCGTCGGCTGCGGTGATCAGGCGCTGCATCGCCGCGATGAGCCTGGGGCTTGGCGCGGGGGCGTTCGGCTGGTGCCGGCGCCAGGCAAGAAGCCGCCAGACATCGCCCTGCTGTCCGACGCCTCAGGTTCATCAACTCCACTCGCGGCGTCAGCACTGACATACTGAAGGTGAACCAGTAAATGATCTAGGAACCCTCGGTGGTCACGGAAAGGCTGGAGGTTCCGAACCGCGAAATGGCAATGATTGGGATATACCGGTTCCACATCGCTTGCGCGGCTCTCTGACGAGAGTCGATTTCTGCTGTTGGGGAGCC # Right flank : CCTTCCGTACCTACCAGTGCTGCTGGGTACGAGCTGCTCTACGGGCTCAGGAAGGTTCTCGATATCGAGGGCCAGGTCGACACACTTTTGCTGTGGTGACCGTCTGGGCGCGAAAGGAGTCGGTGGTGGCCGCCGACAGGGTTGATGCTCTGTGGTCGGTAGCCACATGGCTCAGGGGATCTGTGACGGTGATTCTTGGGGGTTGTGTATGTCTGGTGTGAGTTCCCTGCGGGCGCATAGTCCTGCTACCGGTTCTGGTCGGTGGCACTCGCTTGCAGATCATCTTCGTGGCACTGCGGTGTTGGCGCGACGGTTCGCTGCACCGTTTGGTGGGGGTGAGGTGGCGTACTGGCTGGGTGCGCTGCATGACGTGGGGAAGGCGTCCTGTGCGTGGCAGGACAAGCTCGCTGTGGTCGGGTCCACTGGGGAAGCGGTGGGTATTGATCACAAGTCGTTGGGGACCAGGGTTGCGCAGGAGCGTGGTCTTGGGCCGTTTGCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGTCTGCGGACCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 6967939-6972055 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607752.1 Micromonospora rifamycinica strain DSM 44983 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6967939 37 100.0 38 ..................................... GAGTAAATATCGTCCCGGATCAATCCGGTCCCTGCGTA 6968014 37 100.0 38 ..................................... CCGGTCCGGCCCCGTCCGGGCGAGTTGACCGGCCGGAT 6968089 37 100.0 38 ..................................... GGCGACACCCGAACGGCCGATCTTGTCGGCGTGTTGCG 6968164 37 100.0 36 ..................................... CAGGCTGATGGTGTAGGTGCCGGCGGGGCCGAAGGT 6968237 37 100.0 39 ..................................... CGCGCGATGCAGTCGGGCCGGGCGTATGCCGCAGAGCGC 6968313 37 100.0 36 ..................................... GGCCCGGGGTGCACGCGCGCCCCGGGCCACCCGACC 6968386 37 100.0 37 ..................................... TGCGCGGTGACGAGGACGCGTGGATGCGGCTGCACTC 6968460 37 100.0 35 ..................................... TTGCGGCGTTCGGCGGTCTGGGCTCTCTGGGCGTT 6968532 37 100.0 36 ..................................... ACTCCATCGGCCGCCACGACCACCAGCGGCTACTCC 6968605 37 100.0 37 ..................................... TGGCGAGACGGAGAGCGCGATGGCGGCAGAGCGGACG 6968679 37 100.0 36 ..................................... CTCGGCCAGTACCGGGCGCTCGCCGTAGAGGACGGC 6968752 37 100.0 35 ..................................... TGCCCGGTCGACACCGGGCACCTCAAGGGCAGCAT 6968824 37 100.0 36 ..................................... GACGACCGGGCCGCGTTGGACCGGGCAATCCGCGAC 6968897 37 100.0 36 ..................................... GGCCAGCAGGGCTGGCGCTACGGCGGTAACGACACC 6968970 37 100.0 38 ..................................... CGCGGGCTGGTCGCGGGGCCGCGGTCGGCGCGGCTGGG 6969045 37 100.0 39 ..................................... CGCCAGGAAGGCCGCCGCGTACTGCTCCCGCTTGCCCAG 6969121 37 100.0 36 ..................................... CAGTACCGGTCGCAGGCCGTCGACGTCGCCGGCCAC 6969194 37 100.0 37 ..................................... GGTGTGTACGCCGATGCGGTGGCCCGGTGGGAAGCCG 6969268 37 100.0 38 ..................................... CCGATCCGCTGTGTGTGTGCCGGGGGTGAGGGGGAGCG 6969343 37 100.0 35 ..................................... TCGATGTGGGGGGTTTCCCCGATGGTGGGTACCCG 6969415 37 100.0 40 ..................................... ACCGTCTCCGGTGGCCGGTGGTCGATCGCGGCGCGGAAGG 6969492 37 100.0 37 ..................................... GACTCGATCGAGCTGGGAATCGGCAGCGTGTCGGCGG 6969566 37 100.0 35 ..................................... GCCCCCAGCTGGAGCTGGAACGCGACCGGGTTGAG 6969638 37 100.0 37 ..................................... CGACGATGGCCCGGCGGGACACGAGCACGGTGCTCAG 6969712 37 100.0 37 ..................................... AGCTACGAGGGCATCACGGTCACCCGGTACGGCACGG 6969786 37 100.0 37 ..................................... TCCCCGTTCGGCTCCGGTGACGACTCGGCGGACAGCG 6969860 37 100.0 38 ..................................... CAGGTGATGTCCCAGTCGTAGGCGTCGATCGTCTCGGT 6969935 37 100.0 37 ..................................... GCGGTGATCGACTTCGCCCGGGATGTGCTGGGGGCGC 6970009 37 100.0 37 ..................................... CGGGCAACGTGCGACGGGTCGACGTGGCCACCCCGTC 6970083 37 100.0 40 ..................................... ACCGTGCTGCCCTCCGCCGGGTGAGCCGGTGCCACCAGCG 6970160 37 100.0 38 ..................................... ACCGTGGCGGCGATCGAGGCGAGGACGTGGTGGATGCG 6970235 37 100.0 38 ..................................... ATCCGCGCGATGGCGGCCTTCGCGGACGTCTTGTTGGG 6970310 37 100.0 36 ..................................... TACGGCGCCGCATACCGAGAGCACGCCAAGGACCTC 6970383 37 100.0 35 ..................................... TCGACCAGATGCCAGCCATGTCGATCCCGGACGGC 6970455 37 100.0 37 ..................................... AGCGCGACCGTCGGCCGTACTACAGCGCGACGGCCGA 6970529 37 100.0 36 ..................................... CGCCACACCCGGTGGTCTGCCACCTCGACGGAGGAA 6970602 37 100.0 38 ..................................... GCGTAGGACTCACAGCAATTGCCATATGTCCCGTCCGC 6970677 37 100.0 38 ..................................... TACGCCGGGAAGGCCACCATCTCGTGGCCGGCCCTGGC 6970752 37 100.0 40 ..................................... TTCGCCCTAGCGATCACGAACGTGTAGAAGGCTTCGTGAT 6970829 37 100.0 36 ..................................... ACCTTCACGGCGCACATCCCGCCGCCGATGCTGCGG 6970902 37 100.0 39 ..................................... CTGGACGCCGGCGACGACCAGGCCGGCGGTCCCCCAGGC 6970978 37 100.0 36 ..................................... ATGCCCGGACGCATCTGGCGAGTCCTCGCCTACACC 6971051 37 100.0 35 ..................................... TCGGCGGCGATGCGGCGCGCGACGGCTCCCGACAG 6971123 37 100.0 40 ..................................... CCCACTCCCGCCGCAGTGGACCGTGACCGCCGCTAGGCCC 6971200 37 100.0 36 ..................................... GGGCGCAGGTAGTCGCGCTCGGCCTCGGGTAGCGGG 6971273 37 100.0 39 ..................................... GGCTATGGGCGTCGGCGCGAAGGAGGCCAACCGGCTGGC 6971349 37 100.0 37 ..................................... CCGGTCGTGCTGGGCGTCGGCAAGCCGGTCGAGGGTG 6971423 37 100.0 37 ..................................... GGCTTCGGCTGGGCCTACACCTTGCGCGATGTGCAGG 6971497 37 100.0 36 ..................................... ACCACGGCCCAGCGGCGTGACCACCGGTACGTGATC 6971570 37 100.0 39 ..................................... GCATGTCGGCCCGCGCCTCCCGCCCGTCCAGGCCCCGGC 6971646 37 100.0 38 ..................................... GAGGTCGGCTTCGACGTCGTCCCACCGGTGTCGGAGGA 6971721 37 100.0 40 ..................................... ACCAGCCGGTCCGCGGTCAGCGCCATCTCGGCGATCAGGT 6971798 37 100.0 37 ..................................... TCGACGGCCCGGCAGGCCTGCCGGTAGGACCAGGAGG 6971872 37 100.0 37 ..................................... GAGATCTCCAGCCGCGCCTCGATCGAGGGCAGCTACT 6971946 37 97.3 36 ............................A........ GAGAAGGTGTGGCGGGTCCAGGTCCCCGCCGAGCCG 6972019 37 97.3 0 ..........................T.......... | ========== ====== ====== ====== ===================================== ======================================== ================== 56 37 99.9 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : CTCCCTCTCGTACAAGCCCGACTACTCGCCCGCCACCTCCGCGGAGATACAGTCGCCTACCAGCCGTGGACGGTGAATTGAACGTGGACCTCCTCGTCACCTACGACGTCGAGACGGTCACCCCACAAGGACAACGCCGCCTCCGCAAAGTCGCCAAGATCTGCGAGGCATACGGACACCGCGTACAGAAATCGGTCTTCGAAGTGGTCTGCCGCGACACCGACAAGGTCCGCTTCGTCGCCGCCCTCCAAGACGCCATCGACCCCACCCAGGACAGCATCCGCATCTACCACCTACCAGCCCACGCCCTCGACGACGTCGAACACCTCGGCAAACCACGACCCATCGACCCACGCGGAGCACTAGTGATCTAGGAACCCCCAGTGGACACGAAAAACCCGGAGGGTTCCGAGGTCAAATACCCGGATCAGAGGAATAAAATGGACAGCGAGCAAGTCGATGAGGGATCGTCTGATCGCTATATTTGCTGCTCGTGAACC # Right flank : CCACAGCACCGACCCTGCCTGCCGGTACGGCTGCTGATGCTGGGGCCAACCACCGCGTCAGGCGAGTGCCCCGCCGACATGAACCCCTGCCGGCGGCGGGTGGGTCGCGCGATGGGCCGGCGCTCGTCGTGCTCGTGCTGATGGTGCCGACCCCTGAGCGGGGTCGCTGGACCCTGGCAACGTGCTGTCACACCCCTCCTTTACCCCGAAAACCCGTGTCGGCGCGTGACAGTAGGCGACAAGTAGCGATCATTGCGCGGGTATGTCTGTGCAGTTCAGTGCCAATTGGCAGCAGATAGCGACAAGGTTCGGATCGTTACTTTCGGTAACCGCGGGTTCGAGGTTCGAGTCCGTGGCCGCACCAGCGAGCGGAGCCATGCTCGTAAGGCCACCTCTTGGGTTGGCGGGGCGGTGAGTCGGAAGGCCGTGGCACCTGTTGTCAGCATAGCTACGGACGACAGTCGATCATCACGTCATCGTCTGCGCCAGGCGATGAGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //