Array 1 1046448-1048397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020401.2 Neisseria meningitidis strain FDAARGOS_214 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1046448 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 1046514 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 1046580 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 1046646 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 1046712 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 1046778 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 1046844 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 1046910 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 1046976 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 1047042 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 1047108 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 1047174 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 1047240 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTGTACG 1047306 36 100.0 30 .................................... CTTCCGCACTTCCAGGGGTTAAATCGGGAC 1047372 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 1047438 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 1047504 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 1047570 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 1047636 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 1047702 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 1047768 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 1047834 36 100.0 30 .................................... TATCCGGACAGCCATTGTTTTCATACATAA 1047900 36 100.0 30 .................................... TTTTCGTTTCAACGACGGCAATGCCGAAGT 1047966 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 1048032 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 1048098 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 1048164 36 100.0 30 .................................... TATCCGGACAGCCATTGTTTTCATACATAA 1048230 36 100.0 30 .................................... TTTTCGTTTCAACGACGGCAATGCCGAAGT 1048296 36 100.0 30 .................................... CTCCGCCGACAAATATGATTCCGGCTGCGG 1048362 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //