Array 1 1090-3054 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYK01000010.1 Salmonella enterica isolate STY6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1090 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1151 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1212 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1273 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1334 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1395 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1456 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1518 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1579 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1640 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1701 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1762 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1823 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1884 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1945 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2006 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2067 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2128 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2189 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2250 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2311 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2373 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2476 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2537 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2598 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2659 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2720 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2781 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2842 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2903 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2964 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3025 29 96.6 0 A............................ | A [3051] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 504099-505591 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYK01000001.1 Salmonella enterica isolate STY6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504099 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 504160 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 504221 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 504282 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 504343 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 504404 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 504465 29 100.0 31 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCC 504526 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 504587 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 504648 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 504709 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 504770 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 504831 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 504892 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 504953 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 505014 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 505076 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 505137 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 505198 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 505259 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 505320 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 505381 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 505442 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 505503 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 505564 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //