Array 1 316426-317979 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPH01000074.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain ABBSB1218-1 NODE_191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316426 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316487 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316548 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316609 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316670 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316731 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316792 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316853 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 316914 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 316975 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317036 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317097 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317158 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317219 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317280 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317341 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317402 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317464 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317525 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317586 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317647 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317708 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317769 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 317830 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 317891 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 317952 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334112-335588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPH01000074.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain ABBSB1218-1 NODE_191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334112 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334173 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334235 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334296 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334357 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334418 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334479 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334540 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334601 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334662 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334723 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334784 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 334845 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 334907 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 334968 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [335010] 335010 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335071 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335132 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335193 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335254 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335315 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335376 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335437 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335498 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335559 29 96.6 0 A............................ | A [335585] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //