Array 1 439254-437549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFGS010000001.1 Saccharibacillus alkalitolerans strain VR-M41 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================== ================== 439253 32 100.0 35 ................................ CTTCGTGCGAATCCAGGAGTCATTCCAGACTTCCG 439186 32 100.0 34 ................................ GTTCGGACAGCGTTGACGCTGTGCCTGGGTATAC 439120 32 100.0 35 ................................ TCTCTTGGCTCATTCCCCCAACTCCCCTTCGAATG 439053 32 100.0 35 ................................ TTGCAGACGTGCGACAGCAAATGCACACTTCCACG 438986 32 100.0 35 ................................ TTCGACGATGAATTGATTCGCCGCGCCTATACAAA 438919 32 100.0 35 ................................ GAGCGAAATCGTGATGTCGTCGGCCGTTCCCGGAG 438852 32 100.0 35 ................................ CTGGAGGACCGGCCGGCGACGCAAACGGCGAGTCC 438785 32 100.0 35 ................................ AGCTGGCTGATCAAGATCACTGTCGCTCCCAGCTC 438718 32 100.0 53 ................................ ACCATCACCCCCACGCGGTCGCTCCCCACGCGGTCGCTCCCCACGCGGGAGCG 438637 32 100.0 35 ................................ TACGCAGGCATTATTCGTATGGGGACAAAGACCGC 438570 32 100.0 33 ................................ AATCCAGCGGGGTGCAATCTCCATTCCCTCCGG 438505 32 100.0 34 ................................ GTCGTTGAGATCCATATATGCACCGACAGCTGCT 438439 32 100.0 33 ................................ TGACGATCATTGTTGTCATGGTGTGTTCCCCTC 438374 32 100.0 35 ................................ CGGTTAATTTTGGGTTTGTGCCTAAAATGATTGTA 438307 32 100.0 36 ................................ ATGAGCCGAATCGCCGTATCGGGCGCGACGCAAGAA 438239 32 100.0 33 ................................ CAAATCACGGTACTACGATGCAAATCCATCTGA 438174 32 100.0 34 ................................ ATCCCACAGATCGCCGCTGGGTTCGCAGCCCTTG 438108 32 100.0 34 ................................ AGCATTACGCCGACCATAGTAAGCGTTCCGCATC 438042 32 100.0 34 ................................ AACTCCACTTCAACCCGAAGAATGCCGGTCGCGA 437976 32 100.0 33 ................................ CAAGTTGCTTTTGGCGGAACGACCACAAAGGTT 437911 32 100.0 34 ................................ TTTGACCGTGGCGTTGATCTTGACTACGTCCAGG 437845 32 100.0 34 ................................ AATCCAATCAAAAATGTCGTTTAGAGTGATCTTG 437779 32 96.9 34 ..................A............. TCGACCTGCACTTTGTCGATGTTTTTGGAGCGAA 437713 32 96.9 34 ....................A........... CTTACGCTTGACTACGATACTGATCCGCGAATCA 437647 32 96.9 35 ............A................... TCGTAGCCGGAACGATAAGCTTGCCCGAGAGCACG 437580 32 75.0 0 ................TTA...C....TCCC. | ========== ====== ====== ====== ================================ ===================================================== ================== 26 32 98.7 35 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : CGAGTCTTTTCTGAAACGGCAATGAGTATTTCCCTAGATCATGAAGCCTTCCGGCTGCCGCGGTCCAGTCCGCAGCTCCGAAGATTCCGGCCATTTCGGCAGCCAATTCCTCGACTTCCGTAAGGTGGACTTTGAGCAGCTGCCAGGTCGATTTGTCGTCGGAGTCCGTGGAATGCGCGTAGTAATCGACCAATGATTCGCCTCCTTGGTGTAAATTGCGAGTCGATTCTGATGTTGTGACTAAGCAATTCTCGCCTGCATGCTCAAATTCCTTTTTATTGATTTATAGTAAAATAAATATTTTTTGTGAATGGAGTGGACTGTGCTAAAAAGTGCGAACCTAAAGCTCTCATAAAATCTCGGGGAGGTTCGCACCCCGCACTGCATAAGGGTTTAAACGATTTAAGTTGTATTTTTGTCCGGTTTTCGATAGGCTGATTTTGAGGTTCGCACTTTTGCGCTCTTGAAGCCTTTAGGGGTAAGGGCTGCAAGGTGGAACA # Right flank : TCCATATTTCTGTATCGCTCTAAGACCTGCCTTTTTCCGAAACGCAAAAACCCCTCCGGTCTCCAGCGTCGATCTCTTTTTAACGCGAGATCTTTTTCCGCTGTCTGCCTTGAGGGGTCATTCTTTTTCGCCGGAGCTTTTTTCCTCCATCCTCCGCCGCTGCTTCGTTTCTGCGTTAAACCTTGAACAGCTCTTCGCCGACCAATCCGGCCGCGCGGTCGCTGCTCAGTTCGCCGAGTCCGATCATCTGTTTAAGATGACCCGCGAAGCTGACGCCTCGGTTCGACAGGACGACGAAGCCCGACTGCAAATCGCGGTTGAATGCGGCAAAGCTGCTGAAGCCGTAGGTCGCACCGTTATGCCAGTGCGTGACGGTGCCGTCTTGGCGCATCGATCTCATCCAGGCGTAGCCGATGCCGACGCCTTTGGACGGCGCGACGGAAGCCTGCTCGTTCTGGCAGTCCAGGAACACCGGCTCGAGCTCCGCCGCGGCGGGATGC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 451287-448118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFGS010000001.1 Saccharibacillus alkalitolerans strain VR-M41 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 451286 33 97.0 34 ................................G ATGTCATTCACCCGGTTAAAGCTTGGAGCAGCGT 451219 33 97.0 35 ................................C TGCACTTCCTCGATGCGCTGTCTCACAAACATCTG 451151 33 97.0 33 ................................C GGCCGGTCCGGCGCGGGCTGACGGCGGCGATCA 451085 33 97.0 33 ................................C CGGGGCGCCCTGTTTGCCGCGCAGGTATGCCGC 451019 33 97.0 33 ................................T TCCTTCGTTCGGCTATCCCGTAAGCTATTGGTT 450953 33 100.0 35 ................................. GCAGATGGTCGAAATGCACAAAGCGGAAATCGACC 450885 33 100.0 34 ................................. GGTGGTGCTCCTGCTCCATCAGCTTCTGAAAAAC 450818 33 97.0 34 ................................G CAGCAGCCCGCGCTCCCGCCATTTGTCATACGGG 450751 33 97.0 34 ................................C GCCATGCGAACGTATTCTGCGAATTCTTCGTCTG 450684 33 97.0 35 ................................C TGCTCCTTTGCCGGTAGATTGAAGCGATACGCCGC 450616 33 100.0 34 ................................. CGGCAAACGCTGCGCTGGGGGTCAACACGACCGG 450549 33 100.0 35 ................................. GGTCACTTTTCCAAATGCACATGATGTACAGCAAA 450481 33 100.0 32 ................................. GGTCGATATTGATCGTAACCGTTGTCTCCCGG 450416 33 97.0 35 ................................G TTCAAAGGAGATATATATTTGATAGTCGATACAAC 450348 33 97.0 32 ................................C CGTCTGCGATTCCCATGCCATCCGGACGCGAT 450283 33 97.0 34 ................................C TGCTGCTGAATCTGACGTGGTCCCAGCTGGAGGA 450216 33 97.0 33 ................................T TTGACCTCCTCGGTCAGCCGGAAGGACTCGACC 450150 33 97.0 33 ................................T GTACAGCCGCTTGGCGATCGACCGGATGTCCTC 450084 33 100.0 33 ................................. TCACGGCACGCGCCATCAAATCCGATCGGAACG 450018 33 97.0 33 ................................G CGGTTCGCCACTCGAAAAACGCCTTTGCGACGC 449952 33 97.0 33 ................................G ACCGGTGGCCGTTACCGTCTCCTCCAACGCCGA 449886 33 100.0 34 ................................. TTGTATTTAAATGACAGCTCATAATACTCACTGT 449819 33 100.0 34 ................................. ATATCTCCCTTTTTCAAATCCGCGTTCAGAAAAT 449752 33 97.0 35 ................................C GATTCGGCGGGAGGGCGCATGAGAGTCATCGACAT 449684 33 100.0 34 ................................. AGATGGATTTAATGAACACAATGAAATTGTAGAA 449617 33 97.0 35 ................................T GGGCTACCGATTGGGTTTGGATGCCGACCGCATTC 449549 33 100.0 35 ................................. TCGAATCGAACGTTCCGGTAACCGACGATGTATCG 449481 33 100.0 32 ................................. GTTTGTAAATGATCGTCAGCATGTTTATTCGC 449416 33 97.0 33 ................................G ACTTATTCACCGGCACTGATAACTGGAACCCGA 449350 33 97.0 33 ................................T ATATAAAGTCGCACCTTTAAAGCGAACTTCTCG 449284 33 97.0 34 ................................C CACTCCCGTTTGATCTGCCGGTTGAGTTCGGATG 449217 33 97.0 35 ................................C CCCTCCTTGTCGTTTCCATGAGTATGCGGTGAATC 449149 33 97.0 33 ................................T TCGAAAGGGTCTGGACCGTGGCGACGATCAGCT 449083 33 97.0 34 ................................T GATAAGAGATGTTAACCCCGGCCGTGGAGTCATA 449016 33 93.9 32 ................T...............T TGTCTTTTGATCCATGATAAAATCCTCCTCGT 448951 33 97.0 36 ................................G GGTAGAGGTTGAGATCAAAACGCGTAAGCTGCGTTA 448882 33 100.0 34 ................................. GCTCCATGAACACCGATTCCCGCAGTGTCTTGGC 448815 33 97.0 34 ................................C AATACTTCGTCAGCACGGTCACCTTGCCGCCCGC 448748 33 97.0 33 ................................C TGGCCGTAGTGATTGGATTGCTTATCGGCCTCG 448682 33 97.0 33 ................................T TACTACACGCGACAGGCGGCGGTCGAGTCGCCG 448616 33 97.0 33 ................................T GCACAACCTCGAATAGCCCGGTCGCCATCAGCC 448550 33 97.0 35 ................................G CGAAGTCATGATCGATGACGGATTGGGGCCGGCTG 448482 33 100.0 34 ................................. ATTCGGCCGTTTCTCTCGTTTGGTCGGCTGTTCC 448415 33 87.9 33 .........C.TA...................G GGAGCGGACGGGTGGAAAACTGGTACGAGTACG 448349 33 90.9 33 .........C.TA.................... AAACGTGGGGGCCGCTGCTCGAGAACGGATATC 448283 33 84.8 34 .........C.TA.T.................T CAGACCTTCGAGCAGCGTCGGGCCCACGTAGATA 448216 33 81.8 33 A....T...CA......A.........A..... TTATATCTTGCACCGTGTGCACCGCCCTGGTGC 448150 33 75.8 0 ..T....T.C...T....C....TG.......T | ========== ====== ====== ====== ================================= ==================================== ================== 48 33 96.4 34 GTCGCACCCTGCGCGGGTGCGTGGATTGAAACA # Left flank : GAGAAGCAAAGTTCTGCGCATACGCGCAATCGTGAGAAATATGGCACTGATGGCACTTCACTGTCGGATAGCTGCATACAAAATCACGAATACAGTGACCTAACAACCCACGGAGCGTCGAACCTAGATAAGGAGGCAAAGGACCTGTTCCTTTAGCTGAAAATATCGCTCTTAACGTTAGTGTCTCAATGTGTTCAAACACTCATTTTCCTCCATCATAGAGTTACTTGATTAGATCAAAATAGCATATTCCCATTATATAGGCATTTGGGATATAAGTCTCTCTCTGTCACTTGCTTTGAATCTTTTGGATCAGAACGTCTTTCCAAAAAGTGCGAACCCCAAGCTCCCATAAAATCCCCAGGAGGTTCGCACCCCGCGCACCGTAAGGGATTTACCGTTTTTAGTTGCGTTTTTGTCCAGTTTTCGGTACGGTAAATTTGAGGTTCGCACTTTTGAGGCCGCCGAGCCTTGTCCTGCAAGGGCTGACAGTGGGAACA # Right flank : ATCCGTCCCACGCTCCTTATATGCCCTGTGGTATGGTCGCCCCCCCATGCAGGTGCCTAATTGAACCAAACGCAGAACCTGCCTTCTCTGAAACGCTTGGACGCACAAAAAAGCCACAGAAAAAATCTCCTGCAGCTCTTTTCCGAGTATCTCCTTGCACCTTCTTCACAACAACAGCAATCCCTCCGGGTCATACCCTTCCTTCGCCCCGACATGTTCGACCTTCCTTTTCCAATTCGCTCCGAGCATATAGTAACGCAGGCTGTCCGTTTTCGGGTCTATAACGTCTTCCAACTGCGTCTTGAGCTGCTTGAACTGAACCGGATCGACGAGGCACTCGAATACGGAATTCTGTACCCGCTGGCCGTAGTTCTGGCAGATCTTCGAGATGGAACGCAGGCGCTTCGCCCCTTCGGGGGAAGTCGTCTGCACATCGTAAGTAATCAGTACCATCATGGCACGATTCCTCTTTTCTTGGATCAACTATAAGTTTCATGTTT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 462405-461644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAFGS010000001.1 Saccharibacillus alkalitolerans strain VR-M41 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 462404 31 100.0 37 ............................... CGGTTTGGTCACCGTCTTCGTCGTAAACCGGGACGTG 462336 31 100.0 35 ............................... TTTAAAGCTGAATTGAGCCATACCTTAAACCTCCG 462270 31 100.0 35 ............................... CGGCGACACGGCGGTCATACGCGCGTAGTCCTCCG 462204 31 100.0 34 ............................... CTCCATCCCCTTTCGCCGCAACGATTGGCGGCGG 462139 31 100.0 34 ............................... CGTCTGGCGATTAAGAACGGCGATCGCAACAAAG 462074 31 100.0 36 ............................... TTGTTCGCAATCCTGGCGATAGTAACCGGCGTCGCG 462007 31 100.0 36 ............................... ACGCATAAATTCGGATTGTTTGGCGCCGGAACGATG 461940 31 100.0 36 ............................... TCGCCTCTGAAAACGTGCGCAGCCAGGGCTTCTAAG 461873 31 100.0 35 ............................... CCGAGTTTAATTCGGGCGCATCCGTTAAACTGTAG 461807 31 100.0 36 ............................... AACTCCAACGGTGCCGCGATTGCCAAAGCCATCCAG 461740 31 100.0 35 ............................... GCATGCTCATCTCCGACGCCCGGCTCCTTGATCGG 461674 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 100.0 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : TGCTTTTGAAGTTCTTAAACCTTGAACAGCGCTTCGCCGACCAATCCGGCCGCGCGGTCGCTGCTCAGTTCGCCGAAATCGAACATCTTTTTGATCTGGCCCGAGAAGCTGACGCCCCGCGGCAAATTGGGACGCTCCCTTATGTAGACAAGCAGATGATTACAACGACTATTACACGTAGAGGTTGAGCACTAAAATAAAATCCATATTAAGATATTTATTGAAAAATCTTTTTCGACGTTGTAAGAATGTTTATCTATGGCAGATCATGAGGGTTCTTCACTTAAGTAAGTATTAGAAGAAATTCGAACAAGTAAAAAGAAGTTCGAAAGTGCGAACCCAAAGCTCTCATAAAATCCCCGGGAGGTTCGCACCCCACATCCTATAAGGGTTTGATCAATTCTTATTGTGTTTTTGTCTGGTTTTGAGTAGGCTGGATTTGAGGTTCGCACTTTTCGGCCTGGGAAGCCTTGCTAGGCAAGAGCTGGGAAGGAGAACAG # Right flank : TCGCTCGGTGATGTGTCGTATGACTTCATAGACGACGCACCCTGCGAGCACAGAAAATTGAGAATATTAGAAAAAGCGAACAAGGAGCTGTTCTCCAAGTTCGCTTTTTTATCACTTTCTTTTTTTATACAGCCATTTAGATTCAGTATTCAATTCTTCTTCGACCGTCGGAAGGGTCTTATCAAATTTCCCTTGTGCTTTGCGATTTGCGGTAAACCACTTATGTGATGCTGCGTCGTTGACCTTTGATCCATTGTTAGCTTCATCTATTTGCGGATAAGAAACCTGTTGAGCAAAATCGAGAGGTTTCCAAGTTGCAATCCTCTTCATGGTCTGCCTAGAAGAGCTCAAGACTTCTAGTTTGCAATGTTCTCTGGAAATTGGCGTTAGCTCCCACTCTCCATTAGACTTGTTAATGCGACGCTGATAAACCTGATCGACTTGGATCTGAATACTTCCCAATCCCAGCGGCTTCGCGCGTCCAATCTTATGAGCACATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //