Array 1 5781-7469 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUP02000001.1 Staphylococcus pseudintermedius strain 117N Contig_1_117N_con, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5781 36 100.0 30 .................................... CCAATCAATTGAATTTGTTGTGCATCTGTT 5847 36 100.0 31 .................................... TGTAGGACATGTGGATGAACGTACAACATTA 5914 36 100.0 30 .................................... TTCTCCTCATTTTTTGAATGTTCTGATTTC 5980 36 100.0 30 .................................... GGAGCCTCATACATGGTGGCAACAAGTTAT 6046 36 100.0 31 .................................... GAACGAAACCGTAACTATCCCATCATACTGT 6113 36 100.0 31 .................................... AATAATACTCAAACAAACTGGCATGGACCTG 6180 36 100.0 30 .................................... TTCCTCGTCATCTTCAAAACCACCATAACC 6246 36 100.0 30 .................................... ACGAGACGACACAATACCACCTGCTCGGCC 6312 36 100.0 29 .................................... TTTTATATCTACTCAGCGCGATGCTAGGC 6377 36 100.0 30 .................................... AATGTGTCTTACTTCGTTTGTTACCTATCA 6443 36 100.0 30 .................................... ATTCGATTTCAGTTGTAAATGCCGGTACTG 6509 36 100.0 30 .................................... GTAAATCTACTGTTCGTAAATGGGAAACTG 6575 36 100.0 29 .................................... TGCTTACGCTTTATGGACCACAAGGAGTC 6640 36 100.0 30 .................................... CGAACGACGAATCAACATGGGTGTCTTTCG 6706 36 100.0 30 .................................... ATTCGCCATTGTTTGCAATTCCTCAATTGT 6772 36 100.0 31 .................................... TCCATAGGTGACACCTTAACCTTGAATAAGT 6839 36 100.0 30 .................................... TGATATAGGGTCGATAACTTTAAATATCAT 6905 36 100.0 30 .................................... TCAAAAACGCAAACACAGCATTGTCTACAA 6971 36 100.0 30 .................................... AGACTTAGACAAAGCTAAACAGTTGTGCAT 7037 36 100.0 30 .................................... ATTTGATTATTATGACAAAGAAAATAGCAT 7103 36 100.0 30 .................................... TTTGACAAAACCTCATCAGTCGATAAACAC 7169 36 100.0 30 .................................... ATTTGGCAAACGTAACGCTCAAAGCACAGC 7235 36 100.0 31 .................................... TGTCGGTTCACCTGATTGAAGCGGACCGTAC 7302 36 100.0 30 .................................... TGTTTTTTATTCGTATGTTATCTCAAATTC 7368 36 97.2 30 ...................................T TTCATAATAAATAAACATATAAACTAAAAA 7434 35 75.0 0 ........-....T.T.TT...A..G.....C...T | A [7446] ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.9 30 GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Left flank : CTATGTTTGGTACGTGTGCAGGCTTAATTGTCCTTGCGAAAGATATCGTAGGCGAAGAAGGCTATCTGCAAAAGTTAGATATTACAGTAGAGCGTAATTCATTCGGGCGCCAAGTCGATAGTTTCGAGTCTGAACTACACATTAAAGGTATTGATCAACCGATTGAAGGTGTTTTTATTCGTGCACCCCATATTCAATCAACAGAAGCAGCCGTTGATGTATTAGGGACGATTGATGACAAAATTATCGCTGTACAACAAGGTCGTTATTTAGGCGTATCGTTCCACCCAGAATTAACAGATGATTATCGCATGACACAATATTTTATAGAACATGTGATGCAGCAGTAGGAATAGATAACCTACAAAACACGTCTAAAGTTGAACCGCTATTCAAAATTAGGCGTGTTTTTATAAGGTTTAAATGGCTATTGTACGCATTATTATTAGTTTTTAAAATAAGTTGCTTCGTTTGATAGATACTGTATAATGAAGCTAGAG # Right flank : TATAGTACATATTGTTACTTAAAAGAAATGCTTTATTTCACATGAACTTAATAAGTGCAAGAAAATTTATGGAAAGGCTTGCAAAATACAGAATGTATGATACAATATAGTTGTAAGTGCTAAAGTGTGCTTATACCTAAATTGACAGAACCTACTAAAACAAGACATTATGTCGTGTTTATCCCGCTAATCTATTAGTGGGATTTTTCTATATCAAGTGATGAATGCGTAGGTTGGGAAAGAATGGGGGAAGATATATGAAAGAAAGATACATATTAGGACTGGATATTGGCATTACTTCTGTCGGTTATGGCATTATTAATAGTCAAACACGAGAAGTGATAGATGCAGGTGTTCGGTTGTTTCCAGAAGCAAATGTTGAAAACAATGAAGGACGTAGGAGTAAAAGGGGGGCACGTCGACTTAAACGAAGACGTATTCATCGCTTGGATCGCATCAAACAATTGTTGCATGAAGCGGGAATAATCGATGGTCAAGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 53756-54957 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUP02000004.1 Staphylococcus pseudintermedius strain 117N Contig_3_117N_con, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 53756 36 100.0 36 .................................... AGAAGAGAAGAAGGACATATTAAGCATATGCATTGT 53828 36 100.0 36 .................................... TATGGTTAGTATTAGAGCTGTTATAAACTATATTGT 53900 36 100.0 37 .................................... AGTTCCATTTTTTTTAATAAGTCTACGCTTACCTTTT 53973 36 100.0 37 .................................... CTAAACAATCTTCATTATAAATTTTATTTAGTTCCAT 54046 36 100.0 39 .................................... ATTTCAGAGTCATCATACATATCATAAATATCTTCTTCA 54121 36 100.0 36 .................................... CTCTTCAGGTCTTTATTCTATTTTCCTTACATATAT 54193 36 100.0 36 .................................... TTTTGCATCATCATGATGTATTCTATTGTTGTTTCT 54265 36 100.0 37 .................................... TTTCTAATGTTTTTTCCATAATAAACCAACTCCTATT 54338 36 97.2 37 ..........................A......... GCTGTAAATGCGGGATTAACTTTTGAACCTTTCTCCG 54411 36 100.0 38 .................................... GGCTTTTTTGAGTAAATTTAACAACCTTGAATCAAGTT 54485 36 97.2 36 ............C....................... TATTTTATAAATATGATTTAAAATATTTTTGTTCAA 54557 36 97.2 35 ............C....................... AGCTAACGTTGGTTTGTATTTACTTTCTTTAATGT 54628 36 100.0 38 .................................... GCCTTGAGGACCGAATTTTGATTTTGTATTAATAAAAA 54702 36 100.0 37 .................................... ACTTGCTCTTTTTCATCAAATTTAACTGGCCAATACA 54775 36 100.0 37 .................................... GATATGCTAACAATTATTAAATTTCAACGAGCTCATC 54848 36 97.2 38 ....T............................... GACTTGTATTCAATCCTGCTTCTTTTATTTGTTTTTTT 54922 36 94.4 0 ............C................T...... | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 99.0 37 AATCGAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : ATGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGTGGTTTCGGCAATTTAATAGGCGATGGAAATATCAAGTCACAATGCATATTCCGATTATTTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCCTCGTTATCAAGGTGTTTCCACAGCTGACT # Right flank : CAGAACTTTCAATGTGAGTTGTGACCAATGAAGCATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGGTGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTATCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 38281-39498 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUP02000014.1 Staphylococcus pseudintermedius strain 117N Contig_14_117N_con, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38281 36 97.2 30 ............................G....... ATTCACCACGTGTCATCAATTCGCGCTCGT 38347 36 94.4 29 .......T....................G....... CGATAAAAGTAATCAAGATGTGGTCTTTA 38412 36 97.2 31 ............................G....... TGCTTTGCTTGTACTGGATATTAACGCTTGT 38479 36 97.2 30 ............................G....... ACAAGCGAACGGTTTACAGTGAGTGCGTTC 38545 36 97.2 29 ............................G....... ATCAAATTGCAATGCTGCAACCATGTGTA 38610 36 100.0 29 .................................... TAAAATCGTGGCACATTTTATTAAGTAAC 38675 36 100.0 29 .................................... GTTAACTGAACTCGAGTGTTGGCGCTTGA 38740 36 100.0 30 .................................... ACAGGCTTAAAGAATCATTACAGTTTGCTA 38806 36 100.0 29 .................................... TACTAAGCAAGACATCAAACGTTTACGGA 38871 36 100.0 30 .................................... AAACTCTTTAGGAATAATATGTTGAACTAA 38937 36 100.0 30 .................................... ACGGACCTCGGTTAATATACGTATGGAATG 39003 36 100.0 30 .................................... TTTCTTGAAAGCTATTGAGCCATACGTTAC 39069 36 100.0 29 .................................... CTTCGAGCAATCAATAAACGTAATGGCTT 39134 36 100.0 30 .................................... ATAGCTTCCTGCAAGATGGCCAGCTTGTAT 39200 36 100.0 29 .................................... TTGCATCAATTGTTTTTGCTGATGGTAAG 39265 36 100.0 30 .................................... TAAACATGTTTTCTTTAATCGCAAGTATTT 39331 36 100.0 29 .................................... CACATTGCGTGAACAAATCGAGGGCGTTA 39396 36 100.0 30 .................................... GATGGGAATCCATTTGCAACTGACAGGCGC 39462 36 86.1 0 ..........................AC.TC.T... | C [39495] ========== ====== ====== ====== ==================================== =============================== ================== 19 36 98.4 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //