Array 1 736862-728720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDZ010000004.1 Bifidobacterium dentium strain 2124B Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 736861 33 100.0 34 ................................. TCAGGCGTATGGGCTTATGTGTAAGGAGCTTCGC 736794 33 100.0 34 ................................. ATCACATTGAATGATCCGGCCACCATCAAGGCCG 736727 33 100.0 34 ................................. CGGTACGACATGAGACAAGCATATCATGCGACAC 736660 33 100.0 34 ................................. ACCTTATCCGGTCCACCAGCATCTGGCAAGTCGA 736593 33 100.0 34 ................................. ATGCACTCGCCACTCCCACACCGAAACTGCCGGA 736526 33 100.0 35 ................................. TCGAAGCAGATCTACATGATCGGCAGGCGCACCAA 736458 33 100.0 35 ................................. ACCTACTGGAAGGTCCATGAAATGTACTTGCGCTC 736390 33 100.0 34 ................................. TTGACTACATGATTTGTCATGTAGTGCGGTTGTG 736323 33 100.0 36 ................................. GGCAGTGACGCGGACATCGATGTCCCGCTCTCCCAA 736254 33 100.0 33 ................................. CATTGATCATCGCCGTGTCGGAAACGAACAAGC 736188 33 100.0 33 ................................. ATTGAACCTGTATGGCGACAATGATCCTGCCGA 736122 33 100.0 33 ................................. TCGCCAACCCGGATTTCGGCATCAAACTGCTCA 736056 33 100.0 34 ................................. AGCATCGCAAGGGCCTCGGACTGGAACACATGGA 735989 33 100.0 33 ................................. TCGGACTCAACGGTTTCAAGACGCCATACCAAC 735923 33 100.0 33 ................................. CACCGGTAGCAGTATTGGACTACCTGCCCCCAA 735857 33 100.0 35 ................................. TCCAAGCTGAAGGTCATTTGCGAAAGGAGCCGCAA 735789 33 100.0 34 ................................. GTGTTGGTGGCGTCATTGGCCGCTTTGGCCGCGT 735722 33 100.0 35 ................................. TCGAAACGGAACCGCTCGTAGACGTATTTCGGGTC 735654 33 100.0 34 ................................. ATGCTTGGAGTGGGCGGTGCTCGGCAACAAGTCG 735587 33 100.0 34 ................................. GTCGATGAGCACGGTGCGATAGGATACCTTTGCG 735520 33 100.0 33 ................................. CTTTGCACCTTCGGCCGGATTATCGGTTTCGGT 735454 33 100.0 34 ................................. CGAAATCAGGCGGTCTGTCATTGTGCATATAATA 735387 33 100.0 35 ................................. CTTGCCGGTTGCGTCGTCGGTCGGTGCGGCGGAAA 735319 33 100.0 35 ................................. TGCTTCGGGACGGTGGAGCTTGAGCAGGGTTTCGC 735251 33 100.0 35 ................................. GTTTGACCATCATGAGGTTGATTCGGTTGTCGGCG 735183 33 100.0 33 ................................. CTAAACACGACACGCCGAACAATCGACGTCATT 735117 33 100.0 34 ................................. CTGTGCAGTAACGCACGTCGCATGGAATTAGAGA 735050 33 100.0 34 ................................. GCATTCGGCAAACTTTATGCCGCAGACCATACGG 734983 33 100.0 35 ................................. TTGGAGCAGAACGGTTTGAAGGCCATGGGTGAAAC 734915 33 100.0 33 ................................. ATGCACGCGCGAACGCGCCGACGATGACGAAAC 734849 33 100.0 34 ................................. GTGGACGCCGGTGCCACCGTACGCGAAACCGACG 734782 33 100.0 34 ................................. CTTGAAAACCTGATCCGCGCCCACGGCGGCGAAG 734715 33 100.0 34 ................................. GTTTTCACCCACGTAAATAGCTCCGCCAACGATG 734648 33 100.0 34 ................................. GTATCGCATGCGCATGTACCAGTAGTTGTTTCCT 734581 33 100.0 35 ................................. CTGCTGAACGATCTGCTACCGCTTGGCCCAGACAC 734513 33 100.0 34 ................................. CTCGTGCTCAACCGCGATGAAATCGAGCAGGCCA 734446 33 100.0 34 ................................. CATCACAAGGCATGGAAAGCAGAAAAAACCAAGA 734379 33 100.0 34 ................................. ACGTGAACTGGTATCGTCGGTGATGATCGGGATG 734312 33 100.0 35 ................................. CAATAAAGTTTAGGTATTACGGGAGTATACTGTGT 734244 33 100.0 35 ................................. CAAGTAGTGCACCGGCAACACCATAATTTTTGACA 734176 33 100.0 34 ................................. AGGACGATTGCGCATATATAGCCCGAAAAAGCGA 734109 33 100.0 33 ................................. CAACAAGGAATGTCAGAATACCTACATTTTCAC 734043 33 100.0 34 ................................. ATGGCATATGGATAAGCTATTTTTACTGCATTAT 733976 33 100.0 34 ................................. AGACTACATAATGTGAATTGGTGTGAAACCGATA 733909 33 100.0 33 ................................. TGGTAAAGGTGCGGGTAAATGGCTAAGTCTGCA 733843 33 100.0 34 ................................. CGCAACGCACCGGACAACAAGGTTACCATCAGGG 733776 33 100.0 35 ................................. ATTGGTGAGGAATTGTGGAGTAATTATCTCAATAT 733708 33 100.0 33 ................................. CACAATCCGAAACGAACACAACGGATGGTTACG 733642 33 100.0 35 ................................. TGGACACACGACGAAAATTGGGCCGCGTATTGGGA 733574 33 100.0 34 ................................. CACGAATTGGAGCCTAAAAAATCAAAAGTATTGT 733507 33 100.0 35 ................................. ATGGCAAGGTTTTTAACAACCCGCTTGGCGAATTT 733439 33 100.0 34 ................................. ATGGACATGGGATTATTACAATGCGGAGCAATAT 733372 33 100.0 36 ................................. AACATAGAGAAACGATACTATTTTATATGAAAAAAA 733303 33 100.0 34 ................................. AGGATTAATAGCAATGCAATTTTCAATGATAGAT 733236 33 100.0 34 ................................. ATCCAAAAAGCAATGCGACAAAAACCGCTAGCAC 733169 33 100.0 34 ................................. ATCTCGAGATAAAATGTATCCCAAAAGCGCAATA 733102 33 100.0 34 ................................. CAAAACAAGGCAGGATCTGAGCTGGATGCCGGAA 733035 33 100.0 34 ................................. AAGCAGATCGCGTCCGGCGCCGTGCAGACGGTGC 732968 33 100.0 34 ................................. GAGTATTTGCCGGCCGCCTCGTATCCACCGCCTG 732901 33 100.0 35 ................................. AGCAGGTATTGCGCGTAGGCGTCGCCGTCCGCCGT 732833 33 100.0 35 ................................. ATCATCCCGTACATAATGCAGTAAAAATAGCTTAT 732765 33 100.0 35 ................................. ATCATCCCGTACATAATGCAGTAAAAATAGCTTAT 732697 33 100.0 35 ................................. ACTACTTCACCTGATTTTATCGCATTTGTGAACGA 732629 33 100.0 35 ................................. GAACAAATCGCAAGCAACGTACTTAGTTATAATGT 732561 33 100.0 34 ................................. CTTCAGCGATCGTGGTCACCAATCGACAACGCTC 732494 33 100.0 35 ................................. CAGCTCGACAGCGACGGTAACATCACCGTCACCAT 732426 33 100.0 34 ................................. AATGTTACGCCTAAAAACGGCTATTTTGTTTTCG 732359 33 100.0 35 ................................. CTCCTAACGTCTTTGATTATTCTACCTCAATGCCC 732291 33 100.0 34 ................................. CGGTAAAGGTGCGGGTAAATGGTTAAGTCTGCAA 732224 33 100.0 33 ................................. AATAGAATACTTAAGAGAATTATTTAATGCAAG 732158 33 100.0 33 ................................. ATGTCCGCAAGTTGCATGGTCTGCTGGTTGCTC 732092 33 100.0 35 ................................. GATATACTTTTCGGCGGTTGCGTGATTGATTTCGG 732024 33 100.0 33 ................................. CGTGATGGAAGCCTCCTGTCCCCCGGCCCCACC 731958 33 100.0 33 ................................. TGGTATTCGTTTGAATGATGAAATTCAAACAAG 731892 33 100.0 35 ................................. GTCCAATCGGCCGCGCAGGTCGGCCTGCGCCTCAC 731824 33 100.0 35 ................................. TCACGACTGGTGCGAGACGTCGAGCCTTCGCATTC 731756 33 100.0 34 ................................. TTCTTCTTTCTTGTTACTACTACTCCTACTACTA 731689 33 100.0 33 ................................. CGCACCCAGCCAAACACCGGCGCCAATATCCAC 731623 33 100.0 34 ................................. AGCTTCGCCGGGACGTGTGACCGCACACTGATCA 731556 33 100.0 33 ................................. GGTGGACTGGCTCGGCACCAGCAGCGGATGATC 731490 33 100.0 34 ................................. GACCTGACGGCGTTCATGGGATACTTGCATCCCA 731423 33 100.0 32 ................................. ATCGACACCACCGCCCTGCACGTCCAACTCGG 731358 33 100.0 34 ................................. TCCACCCGTTTGATCGCCTGGGGAGCCGGTGATG 731291 33 100.0 35 ................................. CGGAGGATGCCTTGCTCACCGCATTCGACGGCGAA 731223 33 100.0 34 ................................. ATACCATTTGCATACATAAAAGCCGATAAAATAA 731156 33 100.0 33 ................................. CAGAACGCCACATCACCCGCCATCGGCGTATAG 731090 33 100.0 33 ................................. CATTACCATCCCTGAATTGCGTACTGCCGTCGC 731024 33 100.0 34 ................................. CGTAATGCACCGGACAACAAGGTTGCAATCAGGG 730957 33 100.0 34 ................................. TTCGCCTGACGCACGGACGCATCATATTTGATGT 730890 33 100.0 34 ................................. GCTGATGTCACGCGCCAATTGCAGGACAATGCCC 730823 33 100.0 33 ................................. AGAAAGCTGGTGAGGAAATGAGCTTCGACACGC 730757 33 100.0 35 ................................. ACTGATTGCCTGATCGTACTCGCTGGACTTGATGT 730689 33 100.0 34 ................................. AACACCACGCAGAGCATGGTCGGCGCATGGGCCT 730622 33 100.0 34 ................................. AAAAGATACACTGGTCGCTATGTCTTTCACAACA 730555 33 100.0 33 ................................. GCCAAGACTTGGTGACATCCCCGGAGCCGGTAG 730489 33 100.0 35 ................................. AACCGAGATGAAAACCTGCTCGAATACACCGCCAA 730421 33 100.0 34 ................................. AGCTTCGAGACGACCGTATCAAGATCATCCTCCC 730354 33 100.0 34 ................................. GTCTGCACGCTGGTGACCAGGACTTTGAATGTGG 730287 33 100.0 33 ................................. CCAGACGGCGGTGATACGGCTGGATCCGCTCAT 730221 33 100.0 34 ................................. ATAGCATTCCGGTTCGATGTGCCGAGCTGGTTCT 730154 33 100.0 34 ................................. CATGGCGTGCGTTGGCATGCGAGACGATACGCCA 730087 33 100.0 33 ................................. TCGAGCGTCTTGTACGTCTCGCTGGCCTTGATG 730021 33 100.0 34 ................................. GGTTTGCGGTGGCATGGCGTCCCGATGGTCTGCG 729954 33 100.0 34 ................................. GGTTTGCGGTGGCATGGCGTCCCGATGGTCTGCG 729887 33 100.0 33 ................................. CTCGCAGCTTGAATGGTCGTGGGGGATATTTTT 729821 33 100.0 33 ................................. AACAACAGGATGAACCAAATCAACACGATAGGA 729755 33 100.0 34 ................................. GTGGTGATGATCTTGTCCGCCAAAAACGGCGTCA 729688 33 97.0 33 ..........C...................... TCACAGACAACAAGAAGGAGATACAGAGAATGC 729622 33 100.0 33 ................................. CCCACGGGGGGTGGTGTTGACGTGTGGCGTGTC 729556 33 100.0 34 ................................. TAATTTTGCGGGTAATACGTCACAATGGGCACCC 729489 33 100.0 35 ................................. GACCGGAAGCTGACCGACGGTCTCGAAATCGCCGT 729421 33 97.0 36 ..T.............................. CACCAGCCCGGCTATCTGCTTAACGCTGACGCGAAG 729352 33 100.0 33 ................................. GCGAGTCCATTGTGGACGAATTTAGCACTTCGC 729286 33 100.0 33 ................................. CGCTACGCTAACCGTCGTACAAGATAAAATTAT 729220 33 100.0 35 ................................. AATCCGGCCAACGTGGACGCCTTCGGGACGTTCGT 729152 33 100.0 33 ................................. ACCGACCGGGTGATGCAGACAATAGAAGAAAAA 729086 33 100.0 34 ................................. ATGTCGAGGGAGCTGTCAAAGAGATTATCCTCGG 729019 33 100.0 34 ................................. ACGCTCCCGAAGGGAGACAAGGGCGACAAGGGTG 728952 33 100.0 33 ................................. TGTGCCATATAGCTCGTATCACCCGCATTGCGC 728886 33 100.0 33 ................................. TGGTAGAGGTGGATGATCTTGCCTTTGAGTCCT 728820 33 100.0 36 ................................. ACCGCCAAACAGGGGATCGCCGGCATGTTCCTGAAC 728751 32 81.8 0 ................G...T.A.-...A...C | ========== ====== ====== ====== ================================= ==================================== ================== 122 33 99.8 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAATAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGTTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTCGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGGGCGGCCATGGGGTTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGACGCGTTGACCGGTATCGCCTTCACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGTGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCTTCTTTGACGGGTATTCCTCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGGCGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCCGAGGTTGTTATTTTTACGAGGTTGGCGCGTCATGGCGGGACGATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //