Array 1 108452-107690 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSWZ01000005.1 Escherichia coli strain IM9c NODE_5_length_327068_cov_24.198008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108451 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108390 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108329 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108268 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108207 29 100.0 32 ............................. GCGCACCGATGCGTCGAAAAGGCGCTGGAGAT 108146 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108085 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 108024 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 107963 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 107901 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107840 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107779 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107718 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125629-123953 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSWZ01000005.1 Escherichia coli strain IM9c NODE_5_length_327068_cov_24.198008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125628 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125567 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125506 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125445 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125384 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 125323 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125262 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 125201 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 125140 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 125079 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 125018 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 124957 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 124896 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 124835 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 124774 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 124713 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 124652 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124591 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124530 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 124469 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 124408 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 124347 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124286 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124225 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 124164 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 124103 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 124042 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 123981 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //