Array 1 1652-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJV01000428.1 Salmonella enterica strain BCW_5261 NODE_428_length_1812_cov_5.89994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1651 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 1590 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1529 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1468 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1407 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1346 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1285 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1224 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1163 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1102 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1041 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 919 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 858 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 797 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 736 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 675 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 613 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 552 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 491 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 430 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 369 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 308 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 247 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 186 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 125 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 431-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJV01000624.1 Salmonella enterica strain BCW_5261 NODE_624_length_591_cov_5.07765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430 29 100.0 32 ............................. CGATTCAGATTCGCCATTGTTAATTTTCCCCT 369 29 96.6 32 .....T....................... CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT 308 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 247 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 186 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9809-8332 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJV01000062.1 Salmonella enterica strain BCW_5261 NODE_62_length_21198_cov_9.00445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9808 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9747 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9685 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9624 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9563 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9502 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9441 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9380 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9319 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9258 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9197 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9136 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9075 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9013 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 8952 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [8911] 8910 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 8849 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 8788 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 8727 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 8666 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 8605 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 8544 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 8483 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 8422 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 8361 29 93.1 0 A...........T................ | A [8334] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //