Array 1 551-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTMN01000001.1 Escherichia coli strain 44755 44755_S3-contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 550 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 489 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 428 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 367 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 306 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 245 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 184 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 123 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCTGCGTAGCGACCTTTGCTCTCAATTTCGTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17606-16052 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTMN01000001.1 Escherichia coli strain 44755 44755_S3-contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17605 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 17544 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 17483 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 17422 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 17361 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 17300 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 17239 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 17178 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 17117 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 17056 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 16995 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 16934 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 16873 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 16812 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 16751 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 16690 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 16629 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 16568 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 16507 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 16446 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 16385 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 16324 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 16263 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 16202 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 16141 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 16080 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //