Array 1 117456-117618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWCR010000005.1 Bacillus safensis strain HW4 HW4_ctg05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 117456 32 100.0 33 ................................ AAGACTGATAAATTTATAATCCACTCCATCAAT 117521 32 100.0 34 ................................ TTGTCCATGTACGCTTTTTCTATTTGTTCAGGTG 117587 32 87.5 0 .....................C.AT..T.... | ========== ====== ====== ====== ================================ ================================== ================== 3 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCATAAAAAAGCGCTCAGCAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAATACAAAATGACCAATGGAGAAATGGAACAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTGGACCGGCTGATTCACCAAGGAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGATAAAAAATGTGTATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TGATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAACAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTAGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATCGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGT # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 125820-126246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWCR010000005.1 Bacillus safensis strain HW4 HW4_ctg05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 125820 32 100.0 34 ................................ TATATCTGTATCTCCATCACTTGCAGCAGTAGCC 125886 32 100.0 34 ................................ TGTTAATGTGTTTACCTGGTCCTCACTGATCGGC 125952 32 100.0 34 ................................ TATTGAGAAACGTGACGAGTACTATGCGCAGGGA 126018 32 100.0 35 ................................ CGATTTAATATTAAAGTATTTACCACAAGTAAATA 126085 32 96.9 34 ...A............................ TAACATGATCACTCTTGGACATACTGCAATAGCC 126151 32 93.8 32 ...........C............G....... TAGCCGATGGTTCAGCTTGATGTTTTTTTCAA 126215 32 81.2 0 A.................AT.A...G.A.... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATAAAAAGAACATTATTCCTCCATGGGTCGCAATGACGTCGCACTCTATATGAGTGCGTGGATTGAAATATATTGAGAAAGTTTTTTGCTGTATACCAGCTAGGTCGCACTCTACATGAGTGCGTGGGTTGAAATCTGAAGCGTCGCTGACTTTTTTGGTCAAAATAGGTCGCACTCTACGTGAGTGGGTGGATTAATAATTGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGATTCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAAATGAGAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGTGCGAATGTGAGGTGAACATAAAATCCCTGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTAAAGAATGTTATAATTAAGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATATTAGGCGTTGAGTTCCCAAGTAATATAGAGGCGGTCGCACTCTACATGAGTGCGTGGATTGAAATTATATCTGCATTCAGCAACTTTATTGCATGTTGGTCGCACTCTACATGGGTGCATGGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 127232-127789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWCR010000005.1 Bacillus safensis strain HW4 HW4_ctg05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 127232 32 100.0 35 ................................ AGTTCGGTGGGGCTTACATTCCAGTCGGAAAAGAG 127299 32 100.0 34 ................................ ATCTTTTTTACGATATATTTTTGTAGACACAGCC 127365 32 100.0 34 ................................ ATTTAAAAAAATTATTGCCTTTGTGGGAATGGGC 127431 32 100.0 34 ................................ TACTTTTCGTTGAGGAATAAGGTTTGGACCAGCA 127497 32 100.0 33 ................................ TGTATCAACAGGTATCGCACAATCCGCACAACG 127562 32 96.9 34 .........A...................... TTCAAGAACTCTTCGGCTGCACTTGATCCGTCTA 127628 32 100.0 34 ................................ TCGTTTGGATGGACGAAAAGGACAGGTTCAAATA 127694 32 93.8 33 .........A..........A........... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 127759 31 71.9 0 A........A....A.....A.A.-..C.C.G | ========== ====== ====== ====== ================================ =================================== ================== 9 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CATGGGTGCATGGATTGAAATCAGACTGAGGGTTCTCACACGAAAGAACAAGACTCGTCGCACTCTATATGAGTGCGTGGGTTTAAATTAGCGGATGGTTCAGCTTGATGTTTTTTCAAATCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGCAGCTTGAAAGATTGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTTAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGACTATCATCAGTAATAGTTTTTAATTAAATAGGGTTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTAGGGGCGAAAACTTAATTCCTATATAGAAAATTAAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GTTTCTGCGAATTACATAAATTCAAATATCTATCCACACCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACTCGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATGATAATCTCTTCAATTTCATCAAACCGTGCACGCAGCTGACG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //