Array 1 77527-76296 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOQ01000024.1 Cronobacter sakazakii strain MOD1_777122 777122_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77526 28 100.0 32 ............................ AGGCGGTGCTGGCGGTTCAGCTGGCGTTCGTG 77466 28 100.0 32 ............................ AGGCTCTTGAGGTGCTGCACCCGACCGGTAAT 77406 28 100.0 32 ............................ GCGCGCTCTTCATTACACCACCGGCAAAACCA 77346 28 100.0 32 ............................ AATACGGACAACGGCTCGGGCAGCCAGCCAAC 77286 28 100.0 32 ............................ AGCCAGGCACGCCGGATGTCGCCGACGTCGGC 77226 28 100.0 32 ............................ TGAGCCAACCGAAGCGCCTGCCGACAAGCCGC 77166 28 100.0 32 ............................ GCTACCAGTTGTACCGCTCGCCGTATAGTGCG 77106 28 100.0 32 ............................ GCCACCAGACGCAACGTCAGGTTACGCAGCGG 77046 28 100.0 32 ............................ ATAGGTAGAAGATTAATTGATGGATCACAAAT 76986 28 100.0 32 ............................ TCTTCCAGCTTTATTACCTGGCTCACACTTTC 76926 28 100.0 33 ............................ ACTGAGCGAGACCGACGCGCAGATTAACCTGGT 76865 28 100.0 32 ............................ GGCTGGGAACAGCGACAGCCCGAGCGGGAAGA 76805 28 100.0 32 ............................ ACTCACCTGGTCTTCCCCGTACGTCATTACCC 76745 28 100.0 32 ............................ GGCCTGGACAGCGTCACGATAACCAGCACGAC 76685 28 100.0 32 ............................ TGCTCAGAGGTTGCCAGGGTATACCACTGCAG 76625 28 100.0 32 ............................ CACCCGAATCTCCTGGGCGGGCGTAACCCCTA 76565 28 100.0 33 ............................ ACCGTGCTTGAGCTGATAGCGGCGCTGGAAGCC 76504 28 100.0 32 ............................ GAAGTGGGAAAGCTCTCGCTCCCTTGCGCTTA 76444 28 100.0 32 ............................ GTTCAACCCCGGCTATTCAGTCTTAGAGATTT 76384 28 96.4 32 .......................T.... CAATCCTCCCAAGCGACGTTATCTTTTTTGAC 76324 27 92.9 0 ........................-..T | G,T [76301,76304] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAAAAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCATGGCGCACTTCAGCCCACGCCCGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTAAAATACGCCTCGCTAACTTGTTGATTTTTATAATAGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCGTTTATATGATTATAAACAATGGATTAAGCTATTTTTGCTTCA # Right flank : CACAGTGTATTCTCTCTTCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTAAATATCAATATCCGCAATAACCTCGCTGAAGAAACGACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81539-81391 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOQ01000024.1 Cronobacter sakazakii strain MOD1_777122 777122_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 81538 28 100.0 32 ............................ TAATTGCGACAGTAGAAGAACTGGACAGCCAG 81478 28 100.0 32 ............................ ATAATCATTGCGACGCTCACGCGGTGCATATG 81418 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : GACACTCAGCCATGCTCCAGTACAGGAGCGCCGTGAACTGGAAGCCCGCTTTGAAACCCGTGCCTGGCTGACGGATGCCGCCAGCCGGGCCAGCCAGATAAGCCTGGTGACCCATGCTGCAAAGTTCACTCACGGTGATTCCCGAAGCAGCAGCGTTTATCGAACAACCACCTCGGCCGAGGGTTATCTCAGCACGGCATCGCTTGAAAACCCTGCCGCAGATGCGGTCGGTAACGCGGCGGCGCTGGATGTGGCCAAACTTCTGCAAACCGAAGCTGAAGGCGATTCACTGCTCGCGGCGTTGCAGCGCGGCGACTACAGCGCGCTACAGGCGCTGGCGCAGGATGAGGCGCAACTACAGCACTGGGTTGACGGATTTTCCCGGGCATTAACCACAAGCGCGCCTGCCTCGCACAAGCTTGCAAAGCAGATCTATTTCCCGGTGGGTGACGGCTATCACCTGTTAAGCCCGCTTTTCGCGTCATCACTGGCCCATGCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152925-154416 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOQ01000007.1 Cronobacter sakazakii strain MOD1_777122 777122_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152925 29 100.0 32 ............................. AGTGTAAATCGTTGAAATCTGAGCACAATTCA 152986 29 100.0 32 ............................. GCCTTTATGGTCTGCTTTAATTGCTGGATGGA 153047 29 100.0 32 ............................. CGCGTAGCTGAGCTTGAGGCGCGCACTGTCAG 153108 29 100.0 32 ............................. AGATAGGTGAGACCGGAGTCTTCTGGTAGCTG 153169 29 100.0 32 ............................. GCTAGCGAGATTGACCTGAACGGATTCGAGCC 153230 29 100.0 32 ............................. AACTCGCACTGCTTAATGACGACACCGACGGT 153291 29 100.0 32 ............................. CGCAATTTTGCGCTATTATTTTTGTGTCAACA 153352 29 96.6 32 ............................T TCAGGGATTGGCAAAGGAGGCTATATGAGTGA 153413 29 100.0 32 ............................. TGCCAGGGCGGCTTTTTGGACGTTTCCGCCGT 153474 29 100.0 32 ............................. GGCTCCGGCAAGACGCAGGCTTTGCTGCGTAA 153535 29 100.0 32 ............................. TTTCCACAAATTACCCCTGCGGCAGATCGTAG 153596 29 100.0 32 ............................. TCAGCTGTCGCCGGTGCATTGCGCAGAACAGC 153657 29 96.6 32 ...........................A. CCGGTGGTTCCTCAACAATCACCATACTGAAA 153718 29 100.0 32 ............................. GTTGCATTCTTTTCTGGTATCGCTCGTTTCGG 153779 29 100.0 32 ............................. CGAAAATTGATGCGCCGCTGATTGATTACGAA 153840 29 100.0 32 ............................. GCGAGGTGTTTACCGGCGACAAGCTCCCGCCG 153901 29 100.0 32 ............................. AGTTCACATGACGTGTGGCGTGCTATCGAGGC 153962 29 100.0 32 ............................. ATTGCAAAGAGAAAAATGGCGCGCCCTTTGTG 154023 29 96.6 32 ............T................ CGCGTCACCAGCAGTCACAGTCAGCGTCTGGT 154084 29 100.0 32 ............................. ATTTTGATCCATCTACGCTCGGTACCGCTGCA 154145 29 100.0 32 ............................. GATGCACATTTAAAAATTGCGGGGATCGCGTT 154206 29 100.0 32 ............................. CGGATAGCGTGAACAGTGTTGATATTGCTACC 154267 29 100.0 32 ............................. CCCGCAGAGCACTCACTATCTCGACGTTTCCC 154328 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 154389 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACACTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCAAAAAAATGCCATTCAGTATAGAGGGTTACCGTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180648-181653 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOQ01000007.1 Cronobacter sakazakii strain MOD1_777122 777122_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180648 29 93.1 32 .T..........C................ TGCTCAGTTAGCTCTGAGGAAACTCAGGGGAG 180709 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 180770 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 180831 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 180892 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 180953 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 181015 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 181076 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 181137 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 181198 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACCCCATC 181259 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 181320 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 181381 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 181442 29 100.0 32 ............................. GTGGCTTGACTCCGCGCAGGGTCTGCCGTGGT 181503 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 181564 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 181625 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //