Array 1 171225-173328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLW01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171225 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171286 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171347 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171408 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171469 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171530 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171591 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171652 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171713 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171774 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171835 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171896 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171957 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172018 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172079 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172140 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172201 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172262 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172323 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172384 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172445 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172506 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172568 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172629 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172690 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172751 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172812 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172874 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172935 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172996 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173057 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173118 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173179 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173240 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173301 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189836-192671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLW01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189836 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189897 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189958 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190019 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190080 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190141 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190202 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190263 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190324 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190385 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190446 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190507 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190568 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190629 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190690 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190751 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190812 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190873 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190934 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190995 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191056 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191117 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191178 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191239 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191300 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191361 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191422 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191483 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191544 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191605 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191666 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191727 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191788 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191849 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191910 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191971 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 192032 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 192093 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192154 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192215 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192276 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192337 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192398 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192459 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192520 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192581 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192642 29 93.1 0 A...........T................ | A [192668] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //