Array 1 15823-16518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTO01000007.1 Virgibacillus pantothenticus strain DSM 26 super13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 15823 32 100.0 34 ................................ GAGAAACGTCAATTACGATTCGCTCTCCACTGTC 15889 32 100.0 35 ................................ GTGAAATTCCTGTATTGCTTTATTAAGTGTTATAT 15956 32 100.0 34 ................................ GAGAAACGTCAATTACGATTCGCTCTCCACTGTC 16022 32 100.0 35 ................................ GTTACATTCCTGTATTGCTTTATTAAGTGTTATAT 16089 32 100.0 34 ................................ GAGAAACGTCAATTACGATTCGCTCTCCACTGTC 16155 32 100.0 35 ................................ GTTACATTCCTGTATTGCTTTATTAAGTGTTATAT 16222 32 100.0 34 ................................ GAGAAACGTCAATTACGATTCGCTCTCCACTGTC 16288 32 100.0 35 ................................ GTGAAATTCCTGTATTGCTTTATTAAGTGTTATAT 16355 32 100.0 34 ................................ GAGAAACGTCAATTACGATTCGCTCTCCACTGTC 16421 32 100.0 34 ................................ GTGTATTATTTTATTTTTATCGTCTATCTCAACA 16487 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.1 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAAATTTTCCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTAGTTTACAGATTACCCTGTGAATGAAATGAAATACCAATTATGCATTTCGCCACTAATTGTCGAAATATTTTAAGATTCTTCCACTTGTACGGTTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTGGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCTTAACTTAGTTGCTTTATGTAAATATATGGAATAAAATAAAGGGGAAATAAGATTTTTTTCCTAAAAGCAATATATTTTTGACTACTTTTGTAAACTTTTAGGTAAAAATCGCTGTCGCACCTTATATAGGTGCGTGGATTGAAATGTTACATTCCTGTATTGCTTTATTAAGTGTTATATGTCGCACCTTATNNNNNNNNNNNNNNNNNNNNATTCCATTCCTGCTTTATTAAGTGTTATAT # Right flank : CGCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGTGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATAT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : CGCACCTTATATAGGTGCGTGGATTGAAATGTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24707-24940 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTO01000007.1 Virgibacillus pantothenticus strain DSM 26 super13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 24707 33 100.0 34 ................................. TAAATCTGCAAAGCTTAAATCTGTACATCTTAAA 24774 33 100.0 34 ................................. AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA 24841 33 100.0 35 ................................. GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC 24909 32 97.0 0 .............-................... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 99.2 35 GTCGCACCTTATACTAGGTGCGTGGATTGAAAT # Left flank : AACTCGTTTTTGGGGTCTAACCATTATAAAACATCTTTACTAAATTTAAATATAGCAGTATTTTGCTTAAATTTGTAGTTCATAGATGCTGTAGTAATTTAATTTTACTTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGCTACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTCTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : TGTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAACT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATACTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 84464-84756 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTO01000007.1 Virgibacillus pantothenticus strain DSM 26 super13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 84464 32 100.0 32 ................................ TTATCTTTAAGGTTATTAACTTGTCTCTTAGC 84528 32 100.0 33 ................................ TTGCTAAATCCAATAGTGCTAAAAGTATTTCTT 84593 32 100.0 34 ................................ AGGCGAATTTTTACGAAGTGGACGCGAAGGATTT 84659 32 100.0 34 ................................ AGCGTTTTCCTCATCCTGTGGTGTGTTTGCCTTT 84725 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAGTTAAAATAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAAGCACTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAGTAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCACAAATCGAGTATTTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGACTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 88788-89417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTO01000007.1 Virgibacillus pantothenticus strain DSM 26 super13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 88788 32 100.0 35 ................................ TTGCCTATCCCTTACAAAATTAAATTTTAAATCAC 88855 32 100.0 35 ................................ TTTGTTAGATTTATATAACGGAAAGTGGACGATAG 88922 32 100.0 34 ................................ TTAACCATGTGCTTATTACACTTAACAAAGTGTT 88988 32 100.0 35 ................................ TATTAAAGGGAAATAAACTATATTGTAGGCAAGGT 89055 32 100.0 34 ................................ GTTATCGACCGAGCACTAGTCGACCAAGACATAA 89121 32 100.0 34 ................................ TAGGAAGCTTATATCCTTTTTTGAGGTACTGCCG 89187 32 100.0 36 ................................ GATACAAAAGGCGATAAGATCGCTGAAACAGTTACG 89255 32 100.0 34 ................................ TGCATTTTCGGCTTTTGTGGGTAATTTAGGAGGG 89321 32 100.0 33 ................................ ATCTCTGATTTTGACGACCTTGCGAACCGAAAA 89386 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CCTTTGCTAATGATCCAGAATTAGAACTTTGGTATAGAGAATTACCAAGCAATGGAGAGAAGGATTTGCATCGACTTAAAAAGATTTGGGATGTTTTTAAAGAGGAATAAAACAGGTGTAGAAAAATTTCTTCATTTAGACTTATGAGGAAATTTTCTATTGGAAGTTCATTCCAAAAAGAAGTTCAGAAAGTTTCCTAAGCTCAGGGTCATTCTTCGGGATTTATATAATACGCCAACTATAAATTTCCAAAGATAACAAAAACTTACATGACCGCCTTTGGGCATACATTAATTTGTTCTGTATAATAGTATTTTACATAATATACTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : TATAACGGCGACCGGAATAACCTAACTCGTTTAAACGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //