Array 1 1-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837630.1 Streptococcus sp. HMSC034B03 Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 30 83.3 30 ------.............................. CATTTACCATAGCCTACAACACGCTGTTCA 61 36 100.0 30 .................................... CACACGCTTTCTTTCCTCGTGTCAACGCTC 127 36 100.0 30 .................................... ACGTGATATCAACTACTTATAATAATGATT 193 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCTCAAGATTTAAGTAACTGTAAAACTTAATAACTTTTGTGACTTTTATTCTTGTTGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTCAAGTGATTGAAGATTACGGGATTGAGTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACCGTGATGTACCAAACGAAGTTTGGGATGTAGTTTTTGTACTCTCAAGATTTAAGTAACTGT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 316-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837630.1 Streptococcus sp. HMSC034B03 Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 316 36 80.6 30 NNNNNNN............................. TTAATAACTTTTGTGACTTTTATTCTTGTT 382 36 100.0 30 .................................... TCAAGTGATTGAAGATTACGGGATTGAGTA 448 36 100.0 30 .................................... CGTGATGTACCAAACGAAGTTTGGGATGTA 514 31 86.1 0 ...............................----- | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : GTACTCTCAAGATTTAAGTAACTGTAAAACCATTTACCATAGCCTACAACACGCTGTTCAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACCACACGCTTTCTTTCCTCGTGTCAACGCTCGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACACGTGATATCAACTACTTATAATAATGATTGTTTTTGTACTCTCAAGATTTAAGTAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 321720-321553 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837632.1 Streptococcus sp. HMSC034B03 Scaffold50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 321719 36 100.0 30 .................................... TTAGTAACTCAATTTGGAAGTTTGAAAGAA 321653 36 100.0 30 .................................... TTTTACATTTCTATAACAAATCGCGGTGAT 321587 35 75.0 0 ..................AA-..C.T.G.A.C...A | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : CACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTCTCTTCCGGGAAAGTTGGCGGACTGCTCGGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTAGTACACGACTAGATAAGCACGAAGAAGAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACAATACCAAACGTTTTCATCTTTTTCTCTTTGTTTTTGTACTCTCAAGATTTAAGTAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACTCTCAAGATTTAAGTAACTGTAAAACGAGGTGTTGGGATAATGGGTGTGGATACAG # Right flank : TTACAGAACTCATTATTGGGCATTGTTTAATGTAAAAGAAATTTAATGAAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGTTGAAATGGTTTATAATGAAAAGTAACAAGTATATTAGGAGGTCGTCTAATGGAGAGAAAAATTAAAAAATCAGTAGTTGCGACCGGTTTAGCAGCAACCACTATTATTTCGGGCAGTTTATCACATCAAGTAAATGCTGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATACAAGCCGATGCTGCAAAGGTTCAAACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTCAAAGGAGATGTAAATACTTCAAAGGACGCGGTGGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCG # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 322110-321942 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837632.1 Streptococcus sp. HMSC034B03 Scaffold50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 322109 36 100.0 30 .................................... TCTCTTCCGGGAAAGTTGGCGGACTGCTCG 322043 36 100.0 30 .................................... TAGTACACGACTAGATAAGCACGAAGAAGA 321977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : AATACCAAACGTTTTCATCTTTTTCTCTTTGTTTTTGTACTCTCAAGATTTAAGTAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACTCTCAAGATTTAAGTAACTGTAAAACGAGGTGTTGGGATAATGGGTGTGGATACAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTTAGTAACTCAATTTGGAAGTTTGAAAGAAGTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAACTTTTACATTTCTATAACAAATCGCGGTGATGTTTTTGTACTCTCAAGAAAAACTTAGTATCAAAATTACAGAACTCATTATTGGGCATTGTTTAATGTAAAAGAAATTTAATGAAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGTTGAAATGGTTTATAATGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 150026-150193 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837633.1 Streptococcus sp. HMSC034B03 Scaffold51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 150026 36 83.3 30 T..AACTT............................ CGTTCTGAACGCAAGCAACTTGCTAAAGAG 150092 36 100.0 30 .................................... CATCATGAGACAGTTACCTAAAGCTATTAG 150158 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AGACTTCTAGCACATTGATTTCCAAGTCTGTTGCCAAAGACGGAGGTAAGACAGATTACCGCGGTCAAGTCCGTTTTGGCAAGAACAGTGCTGGTTCAAAGTCTCACATTGAGTGCGACACGATTCTTATGGATGGTGAATCCAGCTCAGATACCATTCCGTTTAATGAAATTCACAATTCAAATGTTGCACTTGAACACGAAGCTAAGGTTTCTAAGGTTTCAGAAGACCAGCTTTATTACCTTATGAGCCGCGGTATTAGCGAAGAAGAAGCAACTGCCATGATTATCAATGGCTTTATGGAGCCAATTACCAAAGAGCTCCCAATGGAGTACGCAGTTGAGCTCAACCAGCTCATCAACATGAGTATGGAAGGTTCTGTAGGATAAAAATAAAAACAGTCGTGAGGCTGTTTTTTTGTGCTCCTAATTGAAATAAGAGAAAGAAAAAAGCACCGAATCGGTGCTCACTTTTCAAGTTGGATACGGACAAAGCCTTAT # Right flank : CACAATACACTTTAATCATAGGACTTGCAAAATTTTTCAATCGTGCTATAATACTTTTTAGAGACATATCGCTGACTGGAATCTTTTAGAGAGCGCGTGGAGCTGAAAATCGCGCAGAGGAAGGCAGTTGAGACTACTCTGTTAGCTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTCGGGATGTCGTTTTTTTTATTTTGTTGAAGGGAGAAAAAGTTATGCTCTATATGATTGGCGGATCACCCTGCAGCGGGAAATCAACGCTCGCTTCCCTTCTTGCTCGGAAGTACGATTTGCTTCATATCAAGCTGGATGATTTGGTAGACGAGATGATGAGTCAAGCAAGTGTAGACTCACGACCGATTTGCCTTCTTAGACAGGACAGAAATCCGGAACAAATCTGGATGAGAAATCCAGAAGAGAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 235634-235809 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837637.1 Streptococcus sp. HMSC034B03 Scaffold103, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 235634 31 100.0 42 ............................... CGGATATTAAAGTCCGTAAGTTGCAAGGTAAAGAGAGTTTCC 235707 31 100.0 41 ............................... AAGATAAGAATACGGGAAAATTGATTCATTATATTGTTTCC 235779 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================== ================== 3 31 100.0 42 GTCCCCTCTCGAGGTAATATGGGTTACTAAC # Left flank : CTTTAAAAATTCATCAGGAGACATTTGAGACAGCTCTTCTACATCTGGCAAATCTGCCAAATCATCGAAGTTCAGATTCTTATCAATCTTAGACTTGGTGACAAAGACATCCAATCGGTCGGGCTTTGGTGTCACACGAAAACTGAGCATGCCGCTATCTAAAAAGCTCTCTGGCATTTCCAACTCATCTAAAATCGCATAGAAAAACTCTTCTGTTTTTTCTTGTGGGACTAGAAAATCTGCCATTTCCATCCCACGTTCCTCTAAATCCTCTAATTTTATTGTGATTTTAATCGTTGTATCACTAATTTGCTTCATTTCCATAGGCATTACCTCATACTTCTAGTCTTTTCATTATACTAAAATTTCGGGTTTTTTACAAAAAATAGACAGCCTTTGTTTTCTTTTGCAATTCAAACTTCTAAGAGACATTTTGCCTCAAGAACTTTTGAACTTCAAAATAACAAAAAGCGCCCACTAGAGCGATTTTTATCTATTTT # Right flank : CCCTATATTTTGTACATAAATACCAGAAAACCACCATATCTTGTTTTAACAGCCCAAAAGTGGAAACTTCTTTGATTATAACATATTTTGAACCAAAAAGGAAGAACTGAGAGCTACTTGAGCAGTTTAAGTAACTCCTCATTCTTAACATCGTAATAGGAGAATCGTTCTTCTCTAATATCATAGTTGGACTGGAGGATATCCTTTAATGTTCCCAACAAGGCGCGCAATCTTTTTGAGCTAATTGCCTTTTTATCGATTTCAGCGAGACCATGCGCTAGACGATTTCTTTCCCCGTTGAAACTCTTCACTAATTTGATACTTTCCAGTAAAGACTCTTCCGCCTGATAAAATTCCAAAATATTGCTAAAAGACAAAAGGTTCAAAGTAGAAGTCTTGTTATAGACTCTTTCCTTGCTTTCACTCCCACGCTCCTTCTTCATCTCATGCTCCAGATAGTCAATGATAGCATCGGCATCTGGGTGCGACAGGTTTAGCTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCTCTCGAGGTAATATGGGTTACTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 244524-244698 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837637.1 Streptococcus sp. HMSC034B03 Scaffold103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 244524 30 100.0 44 .............................. TTAGAGACTATGAAGCCGAAGATGGTTTGTTTACAAGGTTTCCG 244598 30 100.0 41 .............................. CTGATTTAGGAATCTATAATATGATCCATGAAAAGTTTCCG 244669 30 76.7 0 .......................NNNNNNN | ========== ====== ====== ====== ============================== ============================================ ================== 3 30 92.2 43 TCCCCTCTCGAGGTAACATGGGTTATTAAC # Left flank : TATCCTCCTGAAAAACTTCCAGCAAACTCTGTTGCGAGAGAGTCTGAATCTCCAGTCCCTTTACAGATATAGATTCTGAGTAAGTATTCAACTGAATCTCTTTTAAGTCCAAAAGCTGAGGCAATATCTCTTCTTCTGCTTCCTGAGCGAGTAGATTAACCGTCCAGATCATTTTTTCTCTCGTGGAGTATAGATTCAAAGAGTAGGGATTTGTTTCTTGCTCATGGAGAAAATCCGCAAAATCTGCCGAAATTCGGCTCATGAGAAATCCCTGTAACTTAGCCACCAGATCATCGTCCCTTATTTCAACCTTTGATAAATGCAATTGTACTTTCTTCACATTTTTAATCCTCCTTACTAAAAAAACGCCCAAAAAGGTGAAAGTATTTTTCACCAATTTAAGGGCGCCCTCTCTGTCTATCAGAACTGTTCTTTACAATCAATATATTAGCATAATGTGAAAACGTTGTCAAGTAGTCTTATGAATTTCACCTAAAAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCTCTCGAGGTAACATGGGTTATTAACCTTCTTAAGAAAAGTTTATAAGAAGATGAATAGGTTTCCGTCCCCTCTCGAGGTAACATGGGTTATTAACGCTGAAAATGGAGACGGTTATAGAGTGTATCTTAGGTTTCCGTCCCCTCTCGAGGTAACATAGGTTATTAACTGTTGTCGGTTGGCCTTTCTACATCGCCTTTCCTGTGTTTCCGTCCCCTCTCGAGGTAACATGGGTTATTAACTAATGGTTATGGTCGTAAGAATACACCTAAAACAGTTTCCGTCCCCTCTCGAGGTAACATGGGTTATTAACATGCAAACGTACAGGCTAAACAGAGAGCTCTAGAAGTTTCCGTCCCCTCTCGAGGTAACATGGGTNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCTCTCGAGGTAACATGGGTTATTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 245592-245340 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV837637.1 Streptococcus sp. HMSC034B03 Scaffold103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 245591 37 100.0 35 ..................................... ACGTTTATTTTATCAATAATAATCATTGAGTTACG 245519 37 100.0 34 ..................................... GAGGCAGGGAGCATGTTATCCTTGCCTCTTAACA 245448 37 100.0 35 ..................................... TCAACTTTCCCACCTGGCTGAATCCAACCTTTAAA 245376 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 35 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : TTGATTCGTTGTTTTGAAACGGAGAATCATAAGGAATTTTTAAGCGGGTATACGGGAGAATAATAATGGGATTTTTTTACAACTTAGACGAAGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGCCTTGTTATTTATGATATTATTAGTAATAAGCGACGTCTCAAACTTTCTAAATTGCTGGAAGGATATGGCATGCGAGTCCAACGTTCTTGTTTTGAGATTGATGTTGAAAAAACAAACTATCATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAGACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGATATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATGTGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATAGG # Right flank : AAAAATGCTACTACCATAAGTTCCTCCTATAAGTCAAGTTAATAACCCATGTTACCTCGAGAGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCATGTTACCTCGAGAGGGGACGGAAACTTCTAGAGCTCTCTGTTTAGCCTGTACGTTTGCATGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACTGTTTTAGGTGTATTCTTACGACCATAACCATTAGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACACAGGAAAGGCGATGTAGAAAGGCCAACCGACAACAGTTAATAACCTATGTTACCTCGAGAGGGGACGGAAACCTAAGATACACTCTATAACCGTCTCCATTTTCAGCGTTAATAACCCATGTTACCTCGAGAGGGGACGGAAACCTATTCATCTTCTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //