Array 1 40897-40515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054015.1 Streptococcus gallolyticus strain FDAARGOS_755 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 40896 36 100.0 30 .................................... TCACAAGGGAAGATAACTCCAGACCAAAAA 40830 36 100.0 30 .................................... TCACAAGGGAAGATAACTCCAGACCAAAAA 40764 36 100.0 30 .................................... TGAATCTGCTAGAACACCATTGTCTCTAGA 40698 36 97.2 30 .................................A.. ATTAAAGTGTGACAAATAGTCATAGTAAGT 40632 36 97.2 46 .................................A.. CGAATGGTTCCAAAACCTGCCATTAAAATAACACCGCTAAGAAGCA 40550 36 94.4 0 ..............T..................A.. | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 98.1 33 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAGAC # Left flank : TGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGTGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TCTAACATTAATCATTGTCATTCGAGTTGAGTTTTAGCGCTGTGCTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTTCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAGAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 43095-41540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054015.1 Streptococcus gallolyticus strain FDAARGOS_755 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43094 36 100.0 30 .................................... AAACATTTTACGTCGATATTATGGAAAATT 43028 36 100.0 30 .................................... ATCCAGTGGTGGAGGTGGTACTGGACAAGT 42962 36 100.0 30 .................................... CGGTGATGTGCTATTATCTGTCGTTAACGT 42896 36 100.0 30 .................................... AAATAACGTTTCTGTTAAAGCATATATTCA 42830 36 100.0 30 .................................... CGTGCCAATTTCCAAAACGTTGCATTTTAA 42764 36 100.0 30 .................................... CAATTCAGTAAAAGATAAGATGGAAGGGCT 42698 36 100.0 30 .................................... AAGACACGTTGTTCACAGACATGCAAAATA 42632 36 100.0 30 .................................... AAGTCAATGATTTCAAAGTCGTTAGTGAGT 42566 36 100.0 30 .................................... GATTATTGATGTTATAATGACGTATACACA 42500 36 100.0 31 .................................... CTAGTAAAGTTGCTCTTCTTGATAATATTCA 42433 36 100.0 30 .................................... TACGAATTTCGAATATAATCATTCACTTCT 42367 36 100.0 30 .................................... TCCGACATTTTACCTTACAAGACAAAATGA 42301 36 100.0 30 .................................... TGCTGACATATTTTCCCAATTGCTAGGAAT 42235 36 100.0 30 .................................... GATTTTCTTTGCGTATATGTATTTCGCACG 42169 36 100.0 30 .................................... ATAATGACAAATCAAAAGATAATTCAGTAT 42103 36 100.0 30 .................................... ATTGTTTGACCCATGAATTCTAACATCAAT 42037 36 100.0 30 .................................... TCATCTCCAAAACGTTTGAAATAATCAAAA 41971 36 100.0 30 .................................... TGACGCAGGTGTTAAACTATTGCAAACTTT 41905 36 100.0 30 .................................... TCCTAAAAATAAATTTGACGAATTGCTATC 41839 36 100.0 30 .................................... ACTATCACTTCTCTTTAAAAATGAATAACA 41773 36 100.0 30 .................................... CTAAACCATAATTAAAAATTGTGTCGTCTT 41707 36 100.0 30 .................................... TTTTACAAATAACCCAAGACATCTATAACG 41641 36 100.0 30 .................................... ACAATCGAGTGTATTTACGAAGCTTGGTTC 41575 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGCTTTTGAGGTATAATATAGTTAAAAATAATGAACCGTTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTTATCAGAAATAGAATGCCATGAAACTTATTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAGACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //