Array 1 3-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUI01000011.1 Pseudomonas yangmingensis strain DSM 24213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. CCGTCCGCACAGGAAAAACGCGCCGAGCGGGC 64 29 100.0 32 ............................. TCAGTCCACCAGATTGTCTGGGAAGAGACCCA 125 29 100.0 32 ............................. TGTCACCTGGAGCATCTGGACAGCCTACAGCC 186 29 100.0 32 ............................. GCTGCGTTCGGCAATACGCTGGCACTGCTGCG 247 29 86.2 0 .......................T..TGA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GCGTTCCCCGCGTCCGCGGGGATGAACCG # Left flank : GAG # Right flank : ACCAATAATCTGAGCTACCTGAGTTGTGGCATGTTATTGGGCTGTTTTTGTAGCAGCGCCTTGCATCACTCCTGCGGATACAGCGTATCCAGCACCTGGCTCTGTTGCTGACGGGCCATTTCCTCGCGTTTTTGTGCCTGAATCACCATTCGTACCGCACGCCACAGTGACTTGCCGCGCCAAGCGGTGTCGCTCTGGCCGAACAGGCAGGCATTCAGGTCGTCGAGTGCTTCCCCTAGTTCTGCGTGTTGTTGGCTGAGGCCGATCAGTCCGTCGCTGTGCTGGCGGCGGGCCCAGGCTTCCAGCGCCTTGCGCGCGTCGGCTGGCTGGTTGCTGCGGCAGGCTGCCTGCAGGTCGGTCAAGGGGTTGTTCTGGGTATCCAGCTCCAGATGTTCTTCTTCTTCGGGCAGCTCCAGTGCTTGCAGCTGGCGACGGGTTCGCCATAGCTGCAGCAGGCTGGCGCCGAGGGCTACGCCGAGTAGCAGGGTTGCCAGCTGCCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGTCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGTCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 111405-108317 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUI01000010.1 Pseudomonas yangmingensis strain DSM 24213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111404 28 100.0 32 ............................ ATAGGCGGATGAGGCGGTTGAACAGGCGCCCC 111344 28 100.0 32 ............................ ATCTGGTGACGTTCGCGTATCTTGCCTCATAT 111284 28 100.0 32 ............................ AGAGCCCCTATGCATGCCCACGGGTTCAAGAT 111224 28 100.0 32 ............................ TATTTGGGCGGTACACAACACACGGATTTCTT 111164 28 100.0 32 ............................ ATCACCCCGTACCCGGCCAGCATCTTCAGGCC 111104 28 100.0 32 ............................ ATCAGTGCGGCGGTGACCATCGGCGGCATTGC 111044 28 100.0 32 ............................ GCGCGGCACTGGTTGCTGGCGCGGGGAGTGAG 110984 28 100.0 32 ............................ AGACGGACAGTGGTGCGACCAGCGCGACACAT 110924 28 100.0 32 ............................ CCCTCCCGCTTCTGGTGGGTGGCGAGGGCATC 110864 28 100.0 32 ............................ TTCGGCGATGCGTACCGCGATCCGCGGGTGCA 110804 28 100.0 32 ............................ TATGCCGGGCTGGGCGCGTTGTACCTCTACGA 110744 28 100.0 32 ............................ TGGAAGGAAACCTCATCCAGCTGCAGAACGAC 110684 28 100.0 32 ............................ AAGAGACGGGAGCCGGTGCGGGTCAGTCCAGA 110624 28 100.0 32 ............................ AGCAGTACCGGCTGGTAATGCCGAGTGACATC 110564 28 100.0 32 ............................ TTGTTGCTTTCCCACTCTGACCTTGCAGGGAC 110504 28 100.0 32 ............................ AATAGCGATCAGCATGACACGCGCTTCTGGCG 110444 28 100.0 32 ............................ AAGAGCCGCCACGGAACGGCAGGCGCTCAGCC 110384 28 100.0 32 ............................ TCTATCTGATCCAGCAGGGCGCGCTCGCGTTC 110324 28 100.0 32 ............................ AGGAAGAAGCAGCACCCCGCCAGAGCCCCTAT 110264 28 100.0 32 ............................ AAGAGCCCGCGCAGATAGCGCGGGTCTGGGTT 110204 28 100.0 32 ............................ AGCGGGGAAGGTCGGTATTGGAGTGCATGGAA 110144 28 100.0 32 ............................ ATGCGGTCGGGCAGTACGCACAATGCACAGTC 110084 28 100.0 32 ............................ TACCCGGAAATTCACCCGGAAGATTGGATCTC 110024 28 100.0 32 ............................ AACGACACCGCCGCCGCGCTCGAACTGCCAGA 109964 28 100.0 32 ............................ AGACCGATGGAAGTATTGCGAATTGGGCCTAC 109904 28 100.0 32 ............................ ATGCGCGGGTGCTAATGGGCATCATTCACCAC 109844 28 100.0 32 ............................ ATCGATGTCAGTAAGGAGTATGTCAACGTGAA 109784 28 100.0 32 ............................ AAATCATGAACTCCTGCGGGGGTGCCGTCATG 109724 28 100.0 32 ............................ ACCGCAGCGCGGGCCGGTAAGCCCTTGCCACG 109664 28 100.0 32 ............................ TCATGGGTCAGGTGTGCCCGGCACGGCTTCTC 109604 28 100.0 32 ............................ ATCGCTGATCCGGTACAGCACTGCCTCGGTTT 109544 28 100.0 32 ............................ AGTCTCAATCAGCGCCACTTCGGCGCGGGTCT 109484 28 100.0 32 ............................ AGGCCATATGAGGTGCCTGCACCTCTTGCCCC 109424 28 100.0 32 ............................ ATCCGGGAGCAGATCAAGCGCGGCGACCTGCC 109364 28 100.0 32 ............................ AATTCCGCTATCCGCGCCTTGTCGGCTGCGAC 109304 28 100.0 32 ............................ CACCGCAAGCAAGGGGGTGAGTGATGGACAAC 109244 28 100.0 32 ............................ TTGGCGGATGTCAACCTCAAGAACGTCAACCC 109184 28 100.0 32 ............................ TCCATGGATACCACGTCCAGATTGGTGAACAA 109124 28 100.0 32 ............................ ACTACGACGCCGAGCGTGACGTGCTGATCCGG 109064 28 100.0 32 ............................ ATTACGGCGGCTGCACATACCAGGGCGCCGGC 109004 28 100.0 32 ............................ AGCTGCCCGGCGAGAATCTCGCCGGTGACCGG 108944 28 100.0 32 ............................ CGACCAAATAACTTAAAGGGATCAAGCGCTTA 108884 28 100.0 32 ............................ AACAGCACGGCGCGTGTAGTCCCGGTGTAGAT 108824 28 100.0 32 ............................ GATATCCAGCGACTCATACAGCGTAGTGCCGG 108764 28 100.0 32 ............................ AAGGCAAGCCGGTGAAGTTTTCCCGCGCAAAG 108704 28 100.0 32 ............................ TATGTCGACACGCACCACATACCGGCCCGGTG 108644 28 100.0 32 ............................ ACATGCGCCTGCCATCTGCGCTCACTGAAAGG 108584 28 100.0 32 ............................ TTCATCGAGCAGGCCGACCTTGACCGCAATCC 108524 28 100.0 32 ............................ TTGACCGCCGTTATCGCTGCGTCATGCGCAAT 108464 28 100.0 32 ............................ ATAATCGACCATTGGTTAACCCATGCGAAAAA 108404 28 100.0 32 ............................ TAGCCCAAGGCGGCACTATCCAAAGCCTGCCA 108344 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 CTGCACTGCCGGATAGGCAGCTCAGAAA # Left flank : CGGCTCTGGAAAATCTGATGCAGCAAAGCTGGCTGAAAGGCATGCGCGACCACACGGAGGTTGGTGAAGCACAGTCTGTGCCGGCCAATGCTGGTTATTGTCGCGTGGTGAGGGTGCAAGCCAAATCCAGTGCCGAGCGTCTGCGGCGGCGCTATCAAAGGCGGCATCCGGAACAATCACCAGAATCGGTACAGCAGCGAATCCCTGACAGTATCGAGCAACGTCTGGAGCTACCTTTTATCCGGCTTAAAAGCCTGAGTACAGGCCAGGACTACCCGCTGTTTATCCAGCAACAACCTGCTACGGACAAGCAGACGGGGCTATTCAACACCTACGGCCTTAGCCAGACGGCCACTCTCCCGTTGTTCTGACCCTTTTTCAGGGCCCTTGAAAAAGGCCCTGAAAATCAAAAAGTTGTATATGTATCAGTCAAAAAGGCTTAGTGCTCAAAAATGGCAAATACTCTTTAACAATCAGCGACTTATGCGCTAATTTATCTA # Right flank : TATGAGTAACGAGCAGTACACTCGCTCAGGTTGATTCGGTTCGGTAGCGCAATCAATGAAGAACATGAGTGAGTGCAGCAAGCTTTCATCGCTCAGCTGGAGGGCGCCAACCGGAAATCACGCCGAAAACAGACTATAAAACCAGCTATTAACTCAGTCTTTTACCAGCCCATTCTTAACAAGGAAGTCCTCAAGGGTTTCTCCAGGAATGGTTGGGCCGGCATCTTCGTCATAGCTCTGCATGCCGACGCAAATGAACCGTTTGATCAGCTGCTCAACAGTGATGCCGAGTTCCTGTGCTCTGCGTTCCATTAACTCGGGCAACGTATCCCGATCGCTAAAGTTGAGTTGAATCTTTGTCATGCGAACATCCTAGCAAACCTTGGACGTTGATTTGCCAATCACAATATTTGGTTGTTTGAAACACTCCGCTCCCTAGCCTGCATGCGGCAGGTCGTGCCGGATAAATAGTTTATTACAGCTGCGCTTAGGCCATAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //