Array 1 13188-11265 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMO01000003.1 Salmonella enterica strain BCW_4958 NODE_3_length_342559_cov_0.636687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13187 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 13126 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 13065 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 13004 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 12943 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 12882 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 12821 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 12760 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 12699 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 12638 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 12577 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 12516 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 12455 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 12394 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 12333 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 12271 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 12210 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 12149 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 12088 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 12027 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 11966 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 11905 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 11844 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 11783 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 11722 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 11661 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 11600 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 11538 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 11477 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 11416 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 11355 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 11294 29 96.6 0 ............T................ | A [11267] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29664-29331 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMO01000003.1 Salmonella enterica strain BCW_4958 NODE_3_length_342559_cov_0.636687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29663 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 29602 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 29541 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 29480 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 29419 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 29358 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //