Array 1 25540-27290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXLV01000009.1 Helicobacter brantae strain MIT 04-9366 _9_6176241.1773, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25540 36 100.0 30 .................................... ATTTACACTGCAATTCTAACAAAGAATTGT 25606 36 100.0 30 .................................... TCATTCACTGATAGTTTCCCATCTGTGGTT 25672 36 100.0 30 .................................... GGCGTTTTTCTCACGCTTTAATACATTGTT 25738 36 100.0 30 .................................... AGGGTTCGCCCTTTGTGGTGGGGGTGGGAA 25804 36 100.0 30 .................................... AAATCTCTCATTTATCGCACTTAATAGAGC 25870 36 100.0 30 .................................... ACCCTACAACAAGTAATACTCCCCACACCA 25936 36 100.0 30 .................................... TTGATTAAAAGATGGGCGTCAGTCCGCCCC 26002 36 100.0 30 .................................... CACGAGGCTCTGATTCTATCACTTCTTTTG 26068 36 100.0 30 .................................... ATTGGTGTGTATCTCCCACAAAAACTTTTT 26134 36 100.0 30 .................................... TAGAGATAGGGTAGTAGTAGATAATAATAA 26200 36 100.0 30 .................................... AATATCTTAGACCCCCTCAACTTCAAGACA 26266 36 100.0 29 .................................... AGCATTCTCAATACTCTTTTTATAGAGAT 26331 36 100.0 30 .................................... CTTGCTACTCCTCACAATGCCAAAGCTAGA 26397 36 100.0 30 .................................... AATACAAAGCTCATTTAGAGAGAATACACG 26463 36 100.0 30 .................................... CGTCAAGTTGAGGTGCAGTTAATAGCTATG 26529 36 100.0 30 .................................... TTTTTGTGTGAATATGCTCTTATAACCGAG 26595 36 100.0 30 .................................... AGCGATAATGGTAATCCGTTATTCTGTTTA 26661 36 100.0 30 .................................... TATGGTTATCGTCGCTATAAATGCAGGATA 26727 36 100.0 30 .................................... TACAAAATAGCACCCTATTTGAGATTTAAG 26793 36 100.0 30 .................................... ATGATTGGGTGCAAATCATTATGGTAGTTG 26859 36 100.0 30 .................................... CTATACCTAAACACCCTAGATTCTCTATAT 26925 36 100.0 30 .................................... AACGCCCTTGCCGTCTGTTCCAAAAGTGGA 26991 36 100.0 30 .................................... TTTGGATAAATTATTGTTTCGTGTGTTTCA 27057 36 100.0 30 .................................... ACTACAACAAGATGTCAGAGAAGCTCTTAA 27123 36 100.0 30 .................................... TGAGCTTCGTCGCTCCTCAAAACAAGGCTA 27189 36 100.0 30 .................................... TCCTATAAGGCACTCCTCTTTGTTAAAAAG 27255 36 77.8 0 ..........................CTTT.GGT.T | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.2 30 ATTTTAGCATAGATAGATTTTTGAAGTGGCTAAAAC # Left flank : TGATGAGGTGAGTTTGCCAATTTTAGATGAGGTAAGCAATGGAAGAGAGGTATATGAGAGTATTAGTGATGTTTGATATGCCCACAAAGACAAAAGAGGATAGAAAAGCGAACACAAAATTTAGACAAAACTTAATCAAAGAAGGGTATTTTATGCTTCAATTCTCTGTCTATGTCAGAGTATGCAAGGGATTGAAGAGTGCAAATAATTATTTGGAGAGATTGGAGCTGATTTTGCCAAAGAAGGGACATATCAGAGCGATGATGATCACAGAAAGACAATTTGACAATATGAAGCTCTTGCTTGGGAAAGAAAGTGAGACAGAAAAAGCTCGTAAGCCCCAACAGCTTACACTTTTTTAGATTCGGTTTTTTGGGGATGCTAGGCAGTTACCCCACAGAGATACCGAAAAACTCTTTATTTTAGCCACTTCAAAAATCTATATTTCGACATTATATCTATTCTCTAATCCCCTTGTCAAGAGATTTTTCAAAGAATCT # Right flank : TTCTTTTTTCTAGTTCTTGCATTTTGGCATAGACAAGGTTTTCAAATAAGCCTACCCCCCCCCCCCCTTTTTTTTTTATGTGAGGGTTATACAGGCAAGACTCGGATTTGAGGATTGAGGTGTTCTTGAAGTGTGTTCTCGATTGCATAGAGTGTGCCTGTGCTAGCAGAAGCACATCCATGACACGCTCCCATATAGCGAATGAAAACATCAGTATATCCATCAGAGCTGTTTTGAATGTCGATGATTTCCAAATCCCCTCCATCCATCATTAGCATTGGGCGGATATGCTCATCAATCGTTCTATCAATCGCTTTTGTTTTTTGTGCGATTGTCATCTCTGAGAATGGAAGTTCTCCGATTTGAGTTTTTTGAGCCTTGTCTTTGAGGGCTTCAGCTTCCATTTCAAGGCGTGTATCTCTAAGAATATCTACTAGATAATAATCCCTCTTCTCATGCCCCCCTGGTTTGACACAGCTTTTACAAAATGCCCCTGCTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGATAGATTTTTGAAGTGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //