Array 1 33769-31900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHT010000037.1 Clostridium perfringens strain 1805-158 NODE_37_length_33991_cov_85.5911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33768 30 100.0 38 .............................. ATAAAGATGGCTGATACCATGGATGGTGGACTTGGTGG 33700 30 100.0 35 .............................. TTTTAATGTTTTTATACAACAATTTAATAACAATT 33635 30 100.0 36 .............................. ATATTGCTTGTTCTTAAGATGTTATCCACAGACTGT 33569 30 100.0 35 .............................. TTGCAAAAGCAAGAATTAGAATTGCAACAAAAAAT 33504 30 100.0 36 .............................. TCTTACTTTAACTTATAAAGAAAATATGTGTGATTA 33438 30 100.0 36 .............................. TGTAACTCAATTTTTTCAAGTTGTAATCTTGGATAC 33372 30 100.0 35 .............................. ATAAACTTTTTTACTCAACATAGAAAGCTTGGTTA 33307 30 100.0 36 .............................. AGATAAAGAGTGTGTTAATTGTGGAAGATTAAGAGT 33241 30 100.0 36 .............................. AAGAGAAAATAAAATAATACAAACAGATGAATATTT 33175 30 100.0 36 .............................. AAATAAAAAAGATATTTTAATTAAAGAACCACTTCG 33109 30 100.0 36 .............................. GATTAAAGGGGTTAAGAAGAAAGTTAGATTTTCTTA 33043 30 100.0 35 .............................. GTTAATCATAAAGCTTTAGAAGCGAAAGCAAAGAG 32978 30 100.0 35 .............................. AACCAAGAAAATTAATACATGGCTAGTATAGGAGG 32913 30 100.0 36 .............................. TAATATACAAGTAGTTGAGATTGGAGATTTAGCTTT 32847 30 100.0 35 .............................. TTTCACCTTTAAAGTAATGCTTAATAACTTCTGTT 32782 30 100.0 36 .............................. TAATATGGCGATTCGAGGAATAAATGGATTAAGTTT 32716 30 100.0 35 .............................. TATAACGTTGGAGGGGATTTAGTTTTTCCAATTTA 32651 30 100.0 36 .............................. CGATAAAGAACTTAATAAAACACATGTAACAGTTCA 32585 30 100.0 36 .............................. TTATTTGTATTACTACTAGAAAAATTTTTAATACGA 32519 30 100.0 36 .............................. TTAACTGGAAAAAGAATGGTGATTATATAGGAGCAT 32453 30 100.0 37 .............................. ATAGAAATTTATATAGTGCTGTTTTAAGTTCTTTAAA 32386 30 100.0 35 .............................. ATTGAAACTATAGACATAAATGATATGGATATTAG 32321 30 100.0 34 .............................. ATCCTTACAATCCTATTAAGATAGGTTCAAGGCT 32257 30 100.0 37 .............................. AAGCATTTGATTTATTATTTTTAACCTTGTATGCGAA 32190 30 100.0 34 .............................. AAGTAGACAACATAGTAAAGCTTATAAGAAATAC 32126 30 100.0 36 .............................. TAAATTAGCTCAAAATGTCGAATTACAAATGTTAAC 32060 30 100.0 35 .............................. GAAAATGGAAGGTTCATACCACAATATTTATTTAA 31995 30 100.0 36 .............................. ATTTGCTTTTGATGAAATTCATCTTACTTTAAATTC 31929 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 36 ATTTAAATACATACCATGTTAAAGTTCAAT # Left flank : AATTTTTATCTGTAAATTTTATAAATTAAGTAATTATTTTATAAATTTATATATTCTGGTAATATTAATTATTTAATAAAATATTAGTTAATAATATAAATATTTTAATCAACTTAGAAACATAGCAATATACCTATTCCAATAATTTAATATTTAAAGTCCTTATATAAAAATATATATATATCAATTTTATTCATAAAATATATATTTTGCGAAGTTATT # Right flank : CTTGTAAAATAGCCATTTCTTTTTCTTGATATTTATCTTTAAGTTAGTTATTTCAACACTTCTCTTATTATTTTACCAGTGTTTCATTTTAATTTAAAGCACCAATATAAAATCAACTTGTAATCTAGTTATTTCAAGGTCTGAAAGGTGATTTTATATGATTTTAGGCTGGTAAAATTTTATTTGTGTATTTATAGATGTTTCTAAGAATGCATTAATTAAACACTAAAATTTACATATTCAGTAAACTTCAAATTTTTATCAGTGAATTGATTTAGCCCTTATACTATGCTAAAATTAACTTATAATTTCGAATTTATTAATTAAAATTTAATAATATAAAGTTTTCTAGGGTTCCGTAGCTTTTTAGTTAGTCTGGTCCAAGAGAAAACGCACAGATAAACTGTGAACACGGAAGGATAAAAGCCTGGGAGATATTTTTATAATATTTCTCTCGCTTTTTTATTTTAAAGGAGGTGTATTGTTATGAAAAAGTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATACCATGTTAAAGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [76.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 9938-13956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHT010000030.1 Clostridium perfringens strain 1805-158 NODE_30_length_40807_cov_70.5738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9938 30 100.0 34 .............................. TATTAAAACTCCTTACTTTTTAATGCTTCTATCC 10002 30 100.0 36 .............................. TATTCTATTACTCTCCTTTCTCTCCAAGAAATATTA 10068 30 100.0 35 .............................. AATAGATAATCTCTTTCCTTTTGTAAGGCCTCCAT 10133 30 100.0 36 .............................. AATATATTAGCTTCAAGTTCTTCTAAATTAAGAACA 10199 30 100.0 36 .............................. ATTAATGTACTTGTTACTTTTGCTTCTGACATTTTA 10265 30 100.0 35 .............................. AATAGAATGTTATACCAGGATGATTTTGAAAGAGT 10330 30 100.0 36 .............................. TGTGGTCTGTTAAACAAGCCTTAACCTTAATCTTTA 10396 30 100.0 36 .............................. ATCATTACTTTTTTAGCTCCAGCAATAAAATATTTT 10462 30 100.0 36 .............................. AGAAAAAACTAAAGAAGTTGTTAGAAGGGAAGATTT 10528 30 100.0 34 .............................. TACAGCTTTGATTATGTAGATAAATTACCTGGAC 10592 30 100.0 36 .............................. TATATCAGGTATTCCGTATCTAATAGATAAATTTGG 10658 30 100.0 35 .............................. TTTTAGATCAAGTACTAATCTTAGTTGCAAAAAAA 10723 30 100.0 35 .............................. TAGTTTGAAAATGCAACTGCTTCTCCATTTTTTAT 10788 30 100.0 35 .............................. ACTATAATTTCTTGTTGCACTTGTGGTTCTTCTTC 10853 30 100.0 36 .............................. GGCGATATAACTTTAAATGGAGTTATTAAAAATAGT 10919 30 100.0 34 .............................. AAGTTCTTAGTTACTCTGCATTTATCTCTATCTT 10983 30 100.0 35 .............................. TAAGGCAATGCGATTTAATATAGCATTGCCTTTTT 11048 30 100.0 36 .............................. GGAACAGTACCACCAACAGGAACATCAATTGGATTA 11114 30 100.0 35 .............................. GCAGATAACATAATAAACATCTCCTTTTCATACAT 11179 30 100.0 36 .............................. TCTTTTAACCTATAAACGCTAGAGATTTTCTGTTGA 11245 30 100.0 35 .............................. AAATATTCCCCTTCCTTAATCTAGCCCAGTAAAAC 11310 30 100.0 35 .............................. CTCTTTGATTCTGGTTATCTTACTAAGAAATTGAA 11375 30 100.0 36 .............................. ATGATATAAACATAATAAAGAAAGGAATTTAAATAT 11441 30 100.0 36 .............................. TAATCATCATCGTAATCGTCAGATTCAGACTCTGTA 11507 30 100.0 36 .............................. AAACACAGAATACAGAAAAGTGTACCAATTGCTACA 11573 30 100.0 35 .............................. GTAAAGAAATGTAGAAGTCCATTAAAAATATTATT 11638 30 100.0 36 .............................. AAAATTGTTTAATTTTATTGGAAATTTACGACTTTG 11704 30 100.0 36 .............................. GCATACACTAGGTATGTTGTTTGAAGATAAGATTAA 11770 30 100.0 35 .............................. TTTAAAGTAGCGGAGATTAAGAATAAAGAAACTTT 11835 30 100.0 35 .............................. TTAAAGATTTAGATACTTTAGCTAAACATCCTACT 11900 30 100.0 34 .............................. TTCATGGGACAAGATATATGGTTCTACAAATGAT 11964 30 100.0 36 .............................. AAATGTGCATAGAATTATTTTGAAACATATACTATA 12030 30 100.0 36 .............................. TTCATTACTTAGCACCTTCTCTTTCTTCCTAATGGC 12096 30 100.0 36 .............................. AAATCTGTTCTATTCATTAAAGATTTAGATACTTTA 12162 30 100.0 36 .............................. TTTCTAGCATATTCTTCTTTTAACTCCTGTAAAGAT 12228 30 100.0 36 .............................. AATGCTAGGTCTTTATTATCTCTAACCGTTACAATG 12294 30 100.0 35 .............................. AGTTTACGAATTTCCATTATCATCACCCCCTTCCC 12359 30 100.0 34 .............................. AAAATAGGGAACTATTCCTAAACCTACATTATCC 12423 30 100.0 36 .............................. ACATATACGTTATAATCAATTTATAAAAGGAGTGAT 12489 30 100.0 36 .............................. ATATTGTTTTAATTTGTTCCTTGTCATATTTATACT 12555 30 100.0 34 .............................. AATACAGAAACCATATATCCTTTACTAGAATCAT 12619 30 100.0 38 .............................. TGAGTAATATAAAAGAATATTGGAATACTGATAATTTA 12687 30 100.0 35 .............................. CAATTAAATAAAATAAGATTACAAGTTCCTAATTT 12752 30 100.0 36 .............................. CTCCTAAAATTTATTTTAACATTATTATATTATAAA 12818 30 100.0 35 .............................. AATAATCTATCTATATAAACTTGTCTAAAATCTAT 12883 30 100.0 36 .............................. TGATGTGAAGGACTCAAATTCCACTTTATACCTTTG 12949 30 100.0 36 .............................. AGTAGTATAAAAGCAAATATAAAGTTATTAAGTTTA 13015 30 100.0 36 .............................. AATAATTATAAAAAAAGTTAAAGAAAACTCTTAAAA 13081 30 100.0 36 .............................. GAAGGAACAGAACCACCAACAGGCAAATCAATCGGT 13147 30 100.0 36 .............................. TACTTTCTGTTCTACCTTCTAGCGTATTTTCTGCAC 13213 30 100.0 35 .............................. TTATATTCTTCAATAATTTCTGGTTTACCACCAAT 13278 30 100.0 36 .............................. AAAAGAATATAACAAACTTGGATTTGGAGAGCCAAT 13344 30 100.0 36 .............................. AAAATTGGATTACTTATATAGTTATAGTATGAAGTT 13410 30 100.0 35 .............................. AAGTTATTTACTGAACCAGTTATAAGTGATTTCTT 13475 30 100.0 34 .............................. TTTCCTTTACTATTAAGAGCATAAACTCTAACTA 13539 30 100.0 34 .............................. ACCATTTATTTAATTTATTTTAACTTTTTTATAA 13603 30 100.0 35 .............................. TGCTCCATTGATGGAGTTACTACTGGAACTGGATT 13668 30 100.0 34 .............................. GTAGATGGTTTAGCTGATTATGGTAGAACAGGTA 13732 30 100.0 35 .............................. TCAATGAACGCTTTACCCTATCCACAATTACATAA 13797 30 100.0 35 .............................. GACTATTACAAGGTTGAAGTTAATTCTAATGACAA 13862 30 100.0 35 .............................. TACTCGATTTGATTTAGAATTGCAAATTGTTCATC 13927 30 93.3 0 ......TT...................... | ========== ====== ====== ====== ============================== ====================================== ================== 62 30 99.9 35 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TGTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAGTTTGTGAAATCCTTGAAATAACTAAGTTTTAGGTTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATCATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTAAAAGT # Right flank : TCATATGTAATTTCTTTAGGGAGTGAAGAGACCAGTGTTCGTCGTTTAAATTTAGCACAAGCTTTTAATCCTATTGGTTCATTAGCTGGTATTATAATGGCTAAATATATAATACTAGGGAATTTACATCCAGCAACTTATGAAGAGAGAGTTGCTATGGGATCAGAGGCCTTAAGTAAAATACAAAACAATGAATTAATATGGGTATGTGTACCATATGTTAGTTTAGTAGTTATAGCTATAATAATTTGGTGCTTCTTTAAGAAAAGTAAAGGTTCAGAAAAAGATGATTCAGGAGAACTTAATATAATTGAATCAATAAAGAAATTAGTAAAAATTCCACGTTATGCTTTTGGAGTAATCACACAATTTTTCTATGTTGGAGTTCAAATAGCTGTTTGGACTTGGACTATAAAATATGTAATGGTTACTGTGGGTATAGATGAAGCATCTGCTGCTAAATATTATCTTATAGCTATGTTTGGATTTATTGCATGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //