Array 1 38419-42946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMY010000013.1 Clostridium perfringens strain CP-15 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 38419 29 100.0 37 ............................. TGGATACAGAGGGTTGATAGTGTCAAAAAAGGTTTTT 38485 29 100.0 36 ............................. TTATTTTTTTAGAAAAAAGAGAGGTGTATTACAATG 38550 29 100.0 36 ............................. AGGGTTGTTTAAGCTTATGTTTTTCTATAGTATCAT 38615 29 100.0 37 ............................. TAAACCAGCAAGACCATTTTAAGATTTTCACACTAGC 38681 29 100.0 37 ............................. TTAAAAATGCTATGTTAAAAGCTAATATAAATTTAAG 38747 29 100.0 36 ............................. TGTCATGGTTTAGGTGATTTAAATATCTATGGTGAT 38812 29 100.0 36 ............................. TAAGTGGTACAAGTAGTTTTAAAGCGCCAGTAAATG 38877 29 100.0 37 ............................. TCTTAAATGGCTTTATGATAGCTTAGGAAGGCAAGTA 38943 29 100.0 37 ............................. CGAAAGAGGTGTATTTTTATTGTGTAAATATGGTATA 39009 29 100.0 36 ............................. GTCTACTTTGTCATCTAATATGATTGATATATCTGT 39074 29 100.0 36 ............................. TTATAAGAAATAAAAATTAATCACTTACTACATTTA 39139 29 100.0 36 ............................. ATGATAGACGACGTTAAATTAGAAAAGCAACTAATA 39204 29 100.0 36 ............................. TCGCTTATACCTTCATCATAAAATCCGACTATATTC 39269 29 100.0 36 ............................. AAAGAGTTCGTTTCTAAGCAACAATACAATAAGAAA 39334 29 100.0 37 ............................. ATATCAATACTTTCATTTTGTGCTTTTTCTCCATCAG 39400 29 100.0 36 ............................. CTATATGAGTTTATAATGGTACTCTCTTCTAGTTTT 39465 29 100.0 36 ............................. GATTCTACAGAGTATGCTCAACAAAAAGAAAAATTA 39530 29 100.0 36 ............................. TAAAGAAAAGCAAGATAAGTTAAATAAACTTAATGC 39595 29 100.0 36 ............................. TAATTGATGATACAAATGTATCATACCAATGGTATC 39660 29 100.0 36 ............................. GGTTATGGCAAGACTATGGCTATGAGTCAAGAATTG 39725 29 100.0 36 ............................. TGGGAAGATGTAAAGCCGGTTGATAAGCCAGTTGAT 39790 29 100.0 36 ............................. TTTCATATATCTTATACACATAGTATATTAACATAA 39855 29 100.0 36 ............................. TATTTTCTAAAGTGAATATTTGAATATTTGCTTGAG 39920 29 100.0 35 ............................. TTCCAAAGGTGTAATATAATCATCATAGCAAGAAA 39984 29 100.0 36 ............................. TTTTAAAATTATTAACTTTTCTATGTCTTATCTCAT 40049 29 100.0 36 ............................. AACACGGACTACACTTTAAATTTTCATTATTGCGTA 40114 29 100.0 36 ............................. AAATTTAAATATAAAGATAGAAGAAAAATATCTATT 40179 29 100.0 36 ............................. TTTTAAAATTATTAACTTTTCTATGTCTTATCTCAT 40244 29 100.0 37 ............................. AATTTTTTATGGATGGACAAAAGTTTTAAAAAAATAG 40310 29 100.0 36 ............................. CTATCCATATAGTTTCCATTTGCTATAGCTACAACA 40375 29 100.0 36 ............................. GTTCGTGATTGTATTGTTTTTGATAGTGAAGATGAT 40440 29 100.0 36 ............................. CCTAAAATAGTAAAAATAGCAGCATTAATATCTCTC 40505 29 100.0 37 ............................. ACAGATGGATATGTAAGATATGAAGGACAACAATCAG 40571 29 100.0 36 ............................. TAACTTTAACTCTTAGCTTTTCTTCCTTCGGAATAA 40636 29 100.0 36 ............................. TTGTATTGTTAGAGTTTATGCACTTACCAAAAATGG 40701 29 100.0 36 ............................. AGCTCCATGCTCTCATATTTATCTTTTAAGAAGTCA 40766 29 100.0 36 ............................. ATGGAAAGTGACATAGGGAAAGAAGAATTTGTACTA 40831 29 100.0 36 ............................. AGTCGTGATCGTTTAGTTTTTGATAATGAAGAAGAA 40896 29 100.0 37 ............................. GTTGATAAACCAACTGATAAACCTGTTGATGGTACTG 40962 29 100.0 36 ............................. TCACTAGCAAGATATCTCCTATGGTTACCAGCTACA 41027 29 100.0 36 ............................. ATAATAATTAGAATCTTTATAAAGCCATTCATTTTT 41092 29 100.0 36 ............................. GGTATAAGTCAGCTTGATTGGAAATTGCCTCTTTAA 41157 29 100.0 36 ............................. ATTCAATAAAATGTCTAAATCATTATCTATAAGTGA 41222 29 100.0 36 ............................. GAGTTATCTTTAAGTATTTATACTGAGGCTTGATAA 41287 29 100.0 36 ............................. TCAGTATGCTTAAATATCCTTTCCCCTTGTACTTGC 41352 29 100.0 36 ............................. CACTTTTAGCCCCTAACTAGGAATGCGGGCGGTTGC 41417 29 100.0 36 ............................. GTTTGATTAGATAAGGCAATTATTCCTTTTCTTAAA 41482 29 100.0 37 ............................. TTACAAATCCATTCATCACACTATACCCTCCATAACT 41548 29 100.0 36 ............................. AATGGTAATCAAGCCTTATCAGGATATGAATATAAG 41613 29 100.0 36 ............................. TTTAATAAACTCAATTATTTTCATAATAATACCTCC 41678 29 100.0 36 ............................. TATTTTTCTCTTAAAGCCAACAACTCATGTGTCATA 41743 29 100.0 36 ............................. ATACTACCATTAGAAACAGAAAAATTAGGAATCAAA 41808 29 100.0 36 ............................. ATAGAACCACTAAAGCCAGTTAATAAAGAAGAATCA 41873 29 100.0 36 ............................. TACTACAAACATAACCTTACTTAGCACAACGTATTA 41938 29 100.0 36 ............................. ATCATAGTACCCATTATTCCAATTCCAATTGGAAGT 42003 29 100.0 36 ............................. TGAATTACTTCCTGGGAAAGTTTCAGTATAAATACC 42068 29 100.0 35 ............................. AAAGCTTAAAGCTTCTAAATTTAATGAAGCATATG 42132 29 100.0 37 ............................. TGTAAGAGGTAACCCCGCCCGCTCGGGCTTAATTTCG 42198 29 100.0 36 ............................. CATAAGGACGAGTTATACAGTAATAAGGTTACTATA 42263 29 100.0 36 ............................. ACGCCCTCATCGGTATATATTAAGCCATCTACATTC 42328 29 100.0 36 ............................. TGTTTTTATTCTTAAAGATGGAGCTATTATTTCAGA 42393 29 100.0 37 ............................. TTTATCATGATAAAGTTGGAGTTGTAGAGAGATTTGT 42459 29 100.0 36 ............................. TAATGTTTTTCCTCCACTTTACTCTTTATAATATTG 42524 29 100.0 37 ............................. ATGTATTGTGATGGTGTTACAAATGCAACTATTTTAA 42590 29 100.0 37 ............................. TTAAAGACATATGATCTAGACAATGAAATGGATGAAG 42656 29 100.0 37 ............................. CTTTCATAGTACTTTCCAACTTTATGCATATAATCCT 42722 29 100.0 36 ............................. GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 42787 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 42852 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 42918 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 70 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AAACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAACAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAGAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGTAATTATTCAGAGTTAGGATTTACTAGAAACACCAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGTTTTTAGCATTTTAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAGAGTGTAATAAATCTTTTAGGCGGTTATAACATAGAGAGTCTATCATACTTAATACTTCCAATATACATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //