Array 1 486484-487510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLV010000003.1 Listeria innocua strain FSL W9-0238 NODE_3_length_492886_cov_130.247924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 486484 36 100.0 30 .................................... GATTCATTAAACAAACGGGGCTTGATTCAA 486550 36 100.0 31 .................................... CATTCGTTCTGTGCGATCATACTTACATCGA 486617 36 100.0 30 .................................... GAAGGCTGTTATTGAACTGGCGACTACTTT 486683 36 100.0 30 .................................... AGGCGACACAAGCGTTAACACAGGACTCGA 486749 36 100.0 30 .................................... AAAAATATCAGCGCCGACAATGTTCTGGCT 486815 36 100.0 30 .................................... ATATTCATTCACCCATTCATATGGATTGCG 486881 36 100.0 30 .................................... ATTCAGTTAACAACTCAATTCCATAAAATA 486947 36 100.0 30 .................................... ACAACAATAAGCTAACAGGGGAAAACAACA 487013 36 100.0 30 .................................... TCTTGACACAGATTACTTATTAACTACGTT 487079 36 100.0 31 .................................... CCGCGGCAATCTCGGCTATTTTTGGAAGTCA 487146 36 100.0 30 .................................... AATTAAGACAAGATTCAAGCTATATTGTAG 487212 36 100.0 30 .................................... TCAATGCAGAGGAAAAAGTAAAAGAATTGG 487278 36 100.0 30 .................................... CGTGATCGTATCACGTAAAAACAACGTAGG 487344 36 100.0 30 .................................... TCTGAGCTTTACGAAAACGATGGTCAACTT 487410 36 100.0 30 .................................... ACAAGTGGAAACATTAGTATCTATGCAATA 487476 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTAGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAAAAAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACAAATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTTCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCGATACTCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAACCATAGAAAATTTAACCCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 302544-302702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLV010000001.1 Listeria innocua strain FSL W9-0238 NODE_1_length_1478364_cov_96.316793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 302544 29 100.0 34 ............................. AAGGTTGAAGCCCATTCATCAAATGAGCTTATAG 302607 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATTGAGCTATAACTGA 302674 29 75.9 0 ............C..CA......AA..GC | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATCGGACGAATCTTAGGTCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTAAAAATCACATTTTCAATTTATATCCATTAAAATATTGCTTTTACCAACTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGG # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //