Array 1 137986-138619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCX01000001.1 Thermosipho melanesiensis strain 430 contig_1A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 137986 30 100.0 36 .............................. TATATCTTATTGAGGCTAAGTGGACGTGCATTTTAT 138052 30 100.0 39 .............................. ATGTTGGATTTCTTCTTTTATCAAGTGTGATAGAAATAA 138121 30 100.0 37 .............................. TAACAAAAAATGTTGTATTGGATTGACGTCGTACTAA 138188 30 100.0 39 .............................. AGACATTAACGCAAATACTGCTCTTGCCGCTCTTGCTTC 138257 30 100.0 36 .............................. TTAAGTAAGTTTTTGGATGGCAAGAGAAGTTTAAAT 138323 30 100.0 37 .............................. TGTGGATGAAAGAATTAGAATTCCCACACCATACACG 138390 30 100.0 37 .............................. TGTACGATGACTCTGGTCGGATTCTACACTCGTTTGA 138457 30 100.0 36 .............................. AAATATTGGTGGTGTTCTTCCTCAAGAATTTTTGGA 138523 30 100.0 38 .............................. ACATTATTGTCATCCTCTGTAACTAGTTACAACACGCC 138591 29 83.3 0 ....-.TT........T...A......... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTCTACCTTACCTTGGAGGAATTGAAAC # Left flank : TTTAAATACTTTATAACCTCCTCAAGTTCTTTTATTTTTACATCTACTTCTTCCGGATTGTTTGAAGACACAGCGCTTTTCACACAAGTTTCTAAATGTGAGTTCAATACCTCAACATTAGCTTTTTTAAGGAGAGATATGGTGGCAAGAATTTGTTTTGAAATGTCTATACAATATCTTCCTTCTTCTATCATTTTCATAACTGCCTCAAGCTGCCCTCTGGCATTCTTTAGTGTTTTTAACGCATTTTTATGTTTCATGTCCAAACCTCCCAAAATTCTTTTACACAAATGAATTATATCATATAGTTAAATGTACTTTAACAAACCATTTTTACATATTTTCTGTCGATCTTAGATAGCACAAAAACCCCTAGGGATCGACAGAAATTTTTGTTAATTTTTATTACAACATACTCAATTTATTTACACTTTACAGATTTATATTATTAAAAGTTGCAAAAAAATATTTTTTGTAATATAATATTTATGAAAACTATG # Right flank : CATCTCTCCTTGAGGGAAATTCGTTGAGGCCCTTTGAACTTTTTACCCTACCTTGAAAGTTGAAACTTATATATCCATGTTAAAATTCCAATAGTAGATATACTTACATTAAGGAGGCATAAAAATGGACTTTTGGAAAATTGTCCTTTTCTCTGTTCTCATATTAATGCTTTCTCCTTTTCAAGTGGAGGTTTCTTCTCATGAAAAGCAAGCATGGTTGAAAAAGGTTAAGGAATACGATGGTGTTCCCTACAAATGGGGAGGAAATTCAAAAGAGGGTATAGATTGCTCAGGACTTGTAATAGAACTTTATCATGCAATTGGAATATTTCTTTTTAAATACGAGAATACTTTGTTACTAGATGTAAGTGCTGATGTGTTGTTCAAATACAATACACGTCCAATAGAATTTTCTGAGTTAGAACCTGGAGATTTGATTTTTTATGATACCGAAAACGATGGAATAATAGATCACGTAGCTATTTTTGCAAAAAAGGAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACCTTACCTTGGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 3252-2753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCX01000003.1 Thermosipho melanesiensis strain 430 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3251 30 100.0 37 .............................. TATTTGGTGTGTGTGTATCTATTGTTCTCAGCTGAAT 3184 30 100.0 37 .............................. AATATATATTGGATCCGCATCAAGTAGTGACTTGAAA 3117 30 100.0 38 .............................. GAATTTGCGCTTTGTCAAGATTGCTGGGAAGAATATTG 3049 30 100.0 39 .............................. AGAAACAAAACAATTAAACAAACCATCATTGTTATTTTG 2980 30 100.0 35 .............................. GCCTCTATTTGTGTTAGTTTCTGAATTGCTTTCGT 2915 30 100.0 36 .............................. TGATGGAACAGTAAGGTTTCAATTAGCCATTCCTGC 2849 30 100.0 37 .............................. TAACGGCGAAATATGGCGCTCGTTTTGAGTGCTTTTT 2782 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTTACCTTACCTTGGAGGAATTGAAAT # Left flank : TTATAAACTAGAAAAACATTTTTTGGATGATGAGATTTATACATCTCTAGTTATGGAGTGGTGAATATGTTTGTAATTTTGTATTACGATGTTAATAAAAAAAGAGTTTCAAAAATGCTTAAAACGTGCAGGAAGTATCTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATTAGTATTTCTAACTTGGAGAGATTAAAAATCGAGTTGGAAAATATAATTAAAGATGAAGATTCAGTAGTGATATATACTTTCAAACAAATGTTTTACAGTAAAAGAGAAGTGTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTATTTAGAAAAATCTGTCGATGTGTAATAGAAGAAAAACTCCGGGAGATCGACAGAAAACAGAATAACATTTTTGTAACTTAGGAATACATTGTGTTAATTATGTTAAATTTAATATGATATAGTTTCAAAAGTATTGCTCTTGAGAAAGAAATATGATAGAATATTAATGGATTCTATG # Right flank : GAAGTTTTAAAAAGTAAGTGTAGCTTATTAAATTTTTTAGCTTTAGAAGAAAATTGAGATATTGGGATTTGATTATTTTACAAATTTATTGATAGGGTTTCGAAGTAGAGAAATAGATATTTTGATTTCAATTGTTTTAATGAGAAAAATATATTTTTTGGGTTGATTTAAAATAATCTAGACAAAACAATGGTTATATTTTAACAAAAGATTTTAGCTTTACTGTTATTATTTTGTTTTAACTTTTGTTTTGGTTGTATTTTTAATTTATTAAAAACAAGAATAAATGTTTAAATTTAAGTTATAAGTATGATAAAATAAAAACGATCAGGTACATGTTGGAAAGGAGGAAGTTGTATGAGACAACGTATTTTGTTTAAGTTGGTAACACCAATAATTATTTTGGCATCTTTGATTATTGTAATATTTATAACTACCTACGTAATAACAACTTCTCAAAAGTTTGATGCGTTGATTGTTAATCTTGCAGGAAGACAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACCTTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 116176-112295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCX01000004.1 Thermosipho melanesiensis strain 430 contig_1B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 116175 30 100.0 38 .............................. TAGTCTTGCTTCGAAAGGGCACGTCGCCGCAATAAAAA 116107 30 100.0 40 .............................. ATAATTTCAGCAAAGGGCTTTCTGTGATCAACCAAAATAA 116037 30 100.0 42 .............................. TGTTCAGATTCTTGTGCTTCTTCTTTTAATGTTTTAAATAAG 115965 30 100.0 44 .............................. TTTACCCCTACCCAAGCACCGCTTGAGGTAGGGGAATAAAACTC 115891 30 100.0 43 .............................. GTTGTAGTATTCGTAAAAATACATTGCTAAATGCTATTATATG 115818 30 100.0 34 .............................. TGCGAAGCATAAAATTTATAAAAATTTAAAATAC 115754 30 100.0 40 .............................. TGTGTTTCAGTAAATACCAAATATCTTGCATGTTTTGTTT 115684 30 100.0 40 .............................. TGACAATATAAAACAAATCGTAACTGTCACCGAAATCCCC 115614 30 100.0 40 .............................. TAAACTTTACTTCTAACAAAATCCTCATAATTAAAAAATA 115544 30 100.0 40 .............................. AACATAATACCCCACCTCCTCATGTAAATCAATTATTTCT 115474 30 100.0 40 .............................. ATACAAGTCAACAACTGTTAATTTTTCTACAATATAATCC 115404 30 100.0 40 .............................. TACACGACAGGCCATGGCACCTTCCCGCCGCTTCCTGGTT 115334 30 100.0 40 .............................. GGGGGTTCGATTATAGCCCCTTTTTTGACAATATAAAACA 115264 30 100.0 44 .............................. ATAAACTTTACTTCTAACAAAATCCTCAAAACTAAAAAATATCA 115190 30 100.0 42 .............................. CTGCAAGCTTTTCAAGTGCGACATTCAAAATTGTGTCTAATG 115118 30 100.0 36 .............................. GGTCCCCTATTATTGCGAGGACTAGCAGTTTAATAT 115052 30 100.0 41 .............................. CAGGGTCACACCCCGAGTGACCCTGCAAATTTTCTTAATTC 114981 30 100.0 35 .............................. AAGTCAATACTGCTCTGCCATGACCGCTATCATCG 114916 30 100.0 40 .............................. AAGGATTTCAACAATTCTATATCAATCCTCTTGAAATACA 114846 30 100.0 41 .............................. CCATTTGGAAGGTCAGATTGACCTTCCCGTTTTGCAAGGTT 114775 30 100.0 37 .............................. ACGTCTCGCCAATTTTATCGCCAGTTTCTGGATCAAT 114708 30 100.0 43 .............................. TCAATATCATGCAAGTCCACCATTACTTCTTCTGATAATTCTC 114635 30 100.0 40 .............................. CACCCCCGCCAAAAATTTTTGTTTCAACCTCCATGCTTTC 114565 30 100.0 43 .............................. GTATTTGTCCATATCCAGAACCCACACAATTATAAAATATATA 114492 30 100.0 46 .............................. TAGTTACACCATTACCTGATAAATTGCCAATGTTAGGGGTTTTTAA 114416 30 100.0 39 .............................. CCTCTAAAATACTTAGAAACAAATGCGCCTAAAATGTTC 114347 30 100.0 39 .............................. AAGAAATTTCAATACAATCACCCAGTCTTTGCACTTGAA 114278 30 100.0 41 .............................. TATTGGTAATGCACCATCTGATTTCGCATATATTGTATATG 114207 30 100.0 36 .............................. CAAGATATCGTTCCCAAACTTGTGTGTTGATGGGTA 114141 30 100.0 37 .............................. CGGTATATGGCGTTACGATTCCGGTTTGTATTGCTTC 114074 30 100.0 40 .............................. TTCTCGCAACCCTTTCAACACCTTCTTTTCTTGTTTTGTC 114004 30 100.0 43 .............................. TTAAATTGTCGCTCAAACGATACTCTTGAACCTCAAAAATACC 113931 30 100.0 42 .............................. CAACCTCTTCGATGCTACGTTTTAATTCTTCTACATGATCCT 113859 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 113790 30 100.0 43 .............................. GTTTGTTTCATCATCGTTCCATATTTCAATTGGTAATTGTTTT 113717 30 100.0 40 .............................. GAAACGATTCCATTGTTAAGTAAAAAAAGAAGAGGACTTT 113647 30 100.0 41 .............................. TTTGTTTTTGGTTGCCTGAATCATACCTGATAATTTTTTGT 113576 30 100.0 38 .............................. GCGACATTGGTAAGTTATACACCAAGCGCGCTAAAAAA 113508 30 100.0 42 .............................. AGATTTTAGTTGATGTACTCTCTTGACAATGCGTTCAAATAG 113436 30 100.0 41 .............................. GCAGTTTTTTCAGCATCCCAGCCATTAGTCCAAAATTCGTC 113365 30 100.0 37 .............................. ATTAAATCTTCATAAAGTCCTATTCCATAATACTTTT 113298 30 100.0 47 .............................. TTGAATTCTGTGATGGATAAAATTTATAAAAATTTAAAATACATTTT 113221 30 100.0 40 .............................. CTATCAATCTTCCTGAAATATATATTTACATATTCACCAA 113151 30 100.0 37 .............................. TAAACTTTACTCCCTTCAAAATCTTCAAAACTAAGAA 113084 30 100.0 39 .............................. CTTTTATTTGATCTAAATCTGCGTTTAGCGGTAAGTATA 113015 30 100.0 40 .............................. GTACAAGTTTGATTAGGTCTTCCTCATCCAATTTATTAAT 112945 30 100.0 37 .............................. CGACGAAAATGATTTCTCCCTCAGAGGGGGGGACTAC 112878 30 100.0 41 .............................. CTGTCCTGCACCCTATCATAAATATTCCAAATACATATTTC 112807 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 112738 30 100.0 38 .............................. TTTGGCAGCCACTGTTGCCTCAGCCACCGTGGCGGCAA 112670 30 100.0 40 .............................. TAAAAATACCCGCAGGCCATTCTTCATCAAAAATAATTGA 112600 30 100.0 40 .............................. TAACTTTTTGCCACGTTTTGTTGGCAACGTTTATTGTTTC 112530 30 100.0 38 .............................. GTAATATTTGGCTTTTTCAAGTTGATCCACGATTGCGT 112462 30 100.0 38 .............................. TGAGGCCTTGTCTTGAACCATATGCTTGGATATGAGAT 112394 30 96.7 40 ........................G..... TACATTTCATATCCAGTATCGTCGCAATATTGCAATGTTA 112324 30 93.3 0 ........................G....A | ========== ====== ====== ====== ============================== =============================================== ================== 56 30 99.8 40 GTTTAGAATCTACCTATGAGGAATAGAAAT # Left flank : CATAAAAGTTTGAAAACTATCTTACTCAAAATCGATAAATCAAGTAGCTCAAAAAAAACATGGCATTGGACTTATCCAACGCCATGTTTTGTTATAATAAATAATTAATTAAATAAAATCAAATCAATTTTTCGAAATAGTATAAATTAATATTGATGTAATTCAAAAAATAATTCAAATAAGTAAATTGTAGATATAAAAAATAATCATTTTATATTTACAAAAAAGAAAAAGTGAATAAAAACACAAATAAAACCGTTACGAAATTCACGGTAATTTTTCTGTAACAACATATCGCAAAGTATCTTTAATAAATGATTTGCAAAATGCTATTTGTAACGTTTGTGTTAAGCAAGAAAAATAACCCGAAAATTGAGTAGGTTTTCCGAAGCTAAAATGTGAATGAAGCCTCATGAATAAATAATTTTACAAATTAGAAACTTCCCGGAAATGCATTCGTAAAAAATAGGGTGTTATAATATTTATGGGGAAAGTGACGG # Right flank : TTTTCAATAGGGATTGAAATATATATTCAAAGAGTTACCTAACCACCCTTTTAAATTAAGGGTGGTTTTTATTTGATTACTTGACTTTTTAAGTAAGAAGAAAAAAGATAAAACAAGATGTGAAAATGTTAATTTTAAAAGGGAAAAATCATAGAGAAATACCTATTTTTGTAACAACAAAACAACGAAGTACATATATATCAAATATTTTTATTATTTTAGAAAGGTATAGGCGAAGAAGCTGTTTATCTTCAAGTTTAAAAAATAAAACTTAAAAACGGAAAAGACAACATTAAATTATGTGTAGGTTATGATATCTTAATAATTAACATTTTTTTATGGTGCTTTTAATTTAAAAAAATGTAAAGATGATATAATTTAGAAAACAAATATGGGGGGTGTCTTTTTTGAAAACAGTGGTTGTTTTAGATTATGGTTCGCAGTATACCCAGCTTATTGTAAGAAGGGTACGTGAAAAGGGGTATTATGCAGAACTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 997795-996709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCX01000004.1 Thermosipho melanesiensis strain 430 contig_1B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 997794 30 100.0 40 .............................. CGCATCAAAGAATGCGAAGAAGAATTAACAAAACAAGAGA 997724 30 100.0 37 .............................. ACTTGACAATGGCGAATCATATCTGAAATCACAATCG 997657 30 100.0 38 .............................. TATGAATAAACAAGAAATGATAGAACTGGTGATTTTTC 997589 30 100.0 42 .............................. ACTTGCATGATATTGAATATATAGGAGTTCTCAATTCTAATG 997517 30 100.0 43 .............................. AAAATACATATAGGGTAGAGGATATAGTTGCATATTTTTACAA 997444 30 100.0 43 .............................. TATTTTATTCTTCCGTCAGGACATTCATTAACGTTGCCCAGTA 997371 30 100.0 44 .............................. GGTAACTTTTGAGTTGCCGCGTACCACCCTTGTGGAAAACCTTG 997297 30 100.0 43 .............................. GGGGAAAGCATGGAGGTTGAAACAAAAATTTTGGGGGGAGGTG 997224 30 100.0 38 .............................. GAAGAAGAGGAGCGTTAGTTTTGCTCCTCTTCTTTTTT 997156 30 100.0 39 .............................. GAAAATTGGTGCAGCTGGTTATGATGGCCTTGTTATGAT 997087 30 100.0 41 .............................. GAAACAAACAGGGACCCCGATATATGGGAGGCTCCCTGGAA 997016 30 100.0 36 .............................. TCTTTTCTCATCCTTGGGGGTGATCGCCCCCAGGGA 996950 30 100.0 40 .............................. GGAGGTAAAGGAAAAATACGGAATTGGAGTTATAAATTTA 996880 30 100.0 40 .............................. ATGAAGTTATTCGTCGTGCTGATTTAAGTAAATTATTTAA 996810 30 100.0 42 .............................. TAAACAAATTTTTGAAAGAAGGGGGTGTGGCGGTAACTGTAG 996738 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 16 30 100.0 40 GTTTCCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTCCGTTATTTTGCCCTCAAATACAGATTTCTGCACCCATTTTAAGTATTTCCTTGCCGTTTTTAAAACTTTTTGTACTCTTTTTTTATTAACATCATATACCATTATTACGTACATTCCGTTCACCCCTTGTTTTTAAAAAGGTATCCCCAGCTAACGCCGGGAATACTAAATCCAAAAAAACATAAAGACAAAGTACATCAATGTATCACAATTTTCAGCCAAAAACCTGTAACATATAAAACCGAAAAATTAAACAAGCAAAGTTTCTTTTTCAAAAATCCTTATCACAAATTTGTATGCAACCTTTATCCTTTTCATTATATTTAACGAATCATATTTAAATAATCTGACATAATCCAAAAAAAGATTACAAAAAAACTGGTGAGATTTTTTCTCACCAGTTTTTCATAAAAAACAAAAAATAAAAATTTTATTCCTTAGCTTTTGTATCATATCAATACAATCTGAATTATTTAGAATTTATATTATTACCACAA # Right flank : CCGTCACCTTTCTCATAAATATTATAACACCTTATTTTTTGCGAATGCATTTCTAGGAAGTTGCTAATTCGTAAATTCACTTATTCATGAAGTTTCTTTTGCATTTTCATTTCGGAAAACCTACTCAATTTTTGGACTATTTTTCTTGCTTAACACAAACGTTACAAAAGACATTTTGCAACCCATTTATTAAAGCTCTTTCCCGGCATGTTGTTACATGAAAATTACCGTGAATTTCGTAACGATTTGCGATGTTGTAAATTGTTTAATTTGCGAAATAGTAAATTTAAATATAATTTTTTATTAAATTTATTCATATCAAATTATCCAAATATTTTATATTTTTATATTTTACACTTTTTTCAAAAATCTTTTTAATCTTTATATAATTATATAATTTACTTATTTGATAATTTTAATCTATTTATTTCCTCGCTTAATATTTTTCAGGGACTTTACTTATTTTTTTATATGTTTCACTCAAAACTAAATCATGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1009857-1008985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCX01000004.1 Thermosipho melanesiensis strain 430 contig_1B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1009856 30 100.0 41 .............................. TTCCAGGGAGCCTCCCATATATCGGGGTCCCTGTTTGTTTC 1009785 30 100.0 39 .............................. ATCATAACAAGGCCATCATAACCAGCTGCACCAATTTTC 1009716 30 100.0 38 .............................. AAAAAAGAAGAGGAGCAAAACTAACGCTCCTCTTCTTC 1009648 30 100.0 41 .............................. AAAAGAAGAGGACTAAAAGTCCTCTTCGAAAATAATCTCTA 1009577 30 100.0 41 .............................. TGGTAATAGCCACTTCCTTTTGTGCCTGGTTAATTAATTTG 1009506 30 100.0 40 .............................. TCTCTTGTTTTGTTAATTCTTCTTCGCATTCTTTGATGCG 1009436 30 100.0 42 .............................. ATTCTTTCATCTCCTTTAATAATTCATCTAAAAAACATAAGT 1009364 30 100.0 39 .............................. CTATTTTCCTTTAAAAATCCTTTTTCTGATAAATATTTA 1009295 30 100.0 37 .............................. CTGTGTGTGGACACCCTTGCTACCATCCCTGACGTGG 1009228 30 100.0 39 .............................. CCGCAACCCCCCACCCACGATTTTTGTTTCTATTATTTT 1009159 30 100.0 43 .............................. ACGCTATTCTCTCAGCGTATTTTTCTATTTTCTATATAAAACC 1009086 30 76.7 42 ....T....A.G.TA.....AG........ TATCCATGGGAGCCTTCTTATAATTTTTTCTCTCAATCTCTT 1009014 30 76.7 0 ......T....C..C..A..A.......TT | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 96.4 40 GTTTAGAATCTACCTATGAGGAATGGAAAC # Left flank : TTATATCATGAAAATTGAATCATATGAAAAATCAAAATTTTTAAAAGAATTTAGTTGGTAAAAAAGTTATAGATAAAATATCAATCGATTTATGGTAAAAAATAAAAATAAATTCGAATTAATTTTTAAAAATATCTTCAATTGTTCAAAAATAAAAATAATTAATTTTTCAAGAATTAAATAATATGCAAAAATAATAAAAAATTATATTTAAATTTACTATTTCGCAAATTAAACAATTTACAACATCGCAAATCGTTACGAAATTCACGGTAATTTTCATGTAACAACATGCCGGGAAAGAGCTTTAATAAATGGGTTGCAAAATGTCTTTTGTAACGTTTGTGTTAAGCAAGAAAAATAGTCCAAAAATTGAGTAGGTTTTCCGAAATGAAAATGCAAAAGAAACTTCATGAATAAGTGAATTTACGAATTAGCAACTTCCTAGAAATGCATTCGCAAAAAATAAGGTGTTATAATATTTATGAGAAAGGTGACGG # Right flank : TGCTTTGTGGTACATTCATATACGAAGTTTTTTAGTTTAGGTCTTCCTAATTATTAATTATTACTCAGTATATATTAATAAACATGTATTAAAAGGATATTTAAACGGGAGATTTTGTGACAAAAAAGTTTATTAGTATTTTTGGAATAAATAATTACTAAAGAAAATAAATATAAAAAACGATATTTTTGCAAACAATAGGGAAAAGACGATAAAGTTTTAATATTCTTAACTGAGGATACAAAAAAATTAAATTGAGACAACTAATCTATAACAAACTTAGAAATTTAAATTAGAAAACTTAATGAACGGTGGAATGTTAAATAAACAGAAGAAAGAAAAAATGTTCGCGTATTCCTATTATGCTTCGTACAATAAGAAAGAATTTGTATTATGAGTAAAAGTACTGGAGCAAATAAACATGATAGTAAAATCTTTGAAAAAACATTGGAAAAAAACAATAGAAAACCAAGAGCTGTAGCAATAGATGCTGGGTATAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //