Array 1 48171-50506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHL010000015.1 Streptococcus suis strain K328 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 48171 32 100.0 34 ................................ ATGGTATAAAGAAAAACAAAAAAACCTTGAAATT 48237 32 100.0 34 ................................ AGTGAAGGGCAGTCGCAGTTGCAGCTATAGCAAG 48303 32 100.0 33 ................................ CTATGCAACCTGGTGGATTCGTCAGGCTATCAC 48368 32 100.0 35 ................................ AACCACTGTGGAACACCTTGAAAGCTCCTTAGAAG 48435 32 100.0 33 ................................ AAGCAACTTTTGAACCAGCCCATTAAGGTCTAA 48500 32 100.0 34 ................................ CGTCCTGTGAAGGCTTGGTACATTTCAAATTCAG 48566 32 100.0 34 ................................ AAGAAAGGTACTCGCTCCGTTCTATCTGGATAAG 48632 32 100.0 34 ................................ AACTGATGTAGCGTTCGGAACACCTACTGGATTG 48698 32 100.0 32 ................................ ATCACTTGATGATAGAATTTTCAACGGTTTAT 48762 32 100.0 36 ................................ ATCTTTTATAGTATTATCATTTCTTGGATTTGAAAT 48830 32 100.0 35 ................................ AAGAAGACTGTCATTCAATCAACCAACGAATTACC 48897 32 100.0 34 ................................ TTTAATGGTCATCCCAACTCCTCCAACGCTACCC 48963 32 100.0 34 ................................ TTCCCTGCATCTTTCCGCAAAGTGATTGCATCTT 49029 32 100.0 33 ................................ CAGTTGCCAAAAGCACTCGAGCTCATATGCAAA 49094 32 100.0 33 ................................ AAAATATGGGGACTTATCGTTCCAAGCCTTATC 49159 32 100.0 33 ................................ TAATATCAGACGTGCCTGAGATTCTGCGCTTGC 49224 32 100.0 35 ................................ TTTGATGTCGCTAGAAGTATAGGCGCCTGCACGAA 49291 32 100.0 35 ................................ TAAATACTCTAAAGACCAAAGTGTAGAAACTCTAC 49358 32 100.0 34 ................................ CCGCAAAATATAAGATACCGTTTAAATCACTGCG 49424 32 100.0 34 ................................ CGGGAGGGTCTGTAGAGGCAACTGGTGGGTATTA 49490 32 100.0 33 ................................ GATTTCAATTTGCAATTCCTCTGCAGTCAAATC 49555 32 100.0 33 ................................ TGGTGCCAGCTATTGCTAGTCAAGGTTGGTGCT 49620 32 100.0 34 ................................ TAACTCGACTTGCAACCATCTCGCAAATCGTGGC 49686 32 100.0 34 ................................ TTCCTGTACACGGTCGGGAAGACAGGTCTGCGAT 49752 32 100.0 34 ................................ TCGAGATTTACAACCAGCTCGAACCAACTAGACA 49818 32 100.0 33 ................................ ATCTCAATGAATGATACTAAAATTCTTCCTTAT 49883 32 100.0 33 ................................ TACTGCATACTCCAATGCTGCCTTAATGTTTTC 49948 32 96.9 34 ....T........................... AAATGGACTAAAGCTGATTTTGATGCTCTTGTGG 50014 32 100.0 34 ................................ AGTAAGTTGATTCATATCAATTCTCCTTCTTCAA 50080 32 100.0 33 ................................ TAATATCATCAAATGCCGACTTATCGCCAAAAC 50145 32 100.0 34 ................................ TGGGAAAGCTGTTTGAACATACTCATCAACTTTT 50211 32 100.0 34 ................................ AGAATGGCATCATCTGAGGAAGGTGGTTGTTCCT 50277 32 100.0 33 ................................ TTAGTCGTCATTTCCTCGGACAGTTTTGTCACG 50342 32 100.0 35 ................................ AAAGTAAGTATTTTACTATTAAAAATCAAAAAACG 50409 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 50475 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.2 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTGAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATAAAAAGTAAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : CTGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACTGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTTGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTCGCGGTCAACAGTAAGGACTGTATCTGGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //