Array 1 964210-965197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027715.1 Pseudomonas chlororaphis subsp. aurantiaca strain M12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 964210 28 100.0 32 ............................ TGGATGCGGCCTCGTGACCACATGCAGGTGTT 964270 28 100.0 32 ............................ TGGAAGTCGCGAGCTGGTGACGGTGCAGGCAT 964330 28 100.0 32 ............................ ATACAGAACGACATCTGCAACGCACTGGCCGG 964390 28 100.0 32 ............................ GATCTCGTCCAGGATCAGCAGCGATGGGCTGA 964450 28 100.0 32 ............................ CGTGACAGTCAGGGTGCTTGCCTGCGGGAGAT 964510 28 100.0 32 ............................ TGGTCACGCACGCCAGGGCCACCTGGCACGGT 964570 28 100.0 32 ............................ AAATCGACGTTTGCGCTGACGTAAGTCCAGCT 964630 28 100.0 32 ............................ ATAGCCGCGCGCAACGCCGGCGTCTGCAAGAC 964690 28 100.0 32 ............................ TGGTTGTAACGCTGATCGCGGCTAACCACCTC 964750 28 100.0 32 ............................ AGATACCGCGATGCCACAGGCCATCAGGTCGG 964810 28 100.0 32 ............................ AACAAGCGGCGCCGTAGCCGCTACGTCACGAG 964870 28 100.0 32 ............................ AGGGGATCAGGGTGTAGTTGTCGGGCATGCCC 964930 28 100.0 32 ............................ CTACTGCTGGCCGAGGCCGGCGAAACCTTCAT 964990 28 96.4 32 ...........A................ CAGGATCGCGCCGAACAAGAGCACCGCCTGTT 965050 28 96.4 32 ...........A................ ATCTGCGCTTCGCGGCCAGCGTTGTAGGACTG 965110 28 92.9 32 ...........A..........C..... AGCCGGGCTTTTTGGTTTCTGCAATTTGGCTA 965170 28 67.9 0 .C.........C.C.......CC.AGCG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : AAGGCTCGTTGCTCGCTGCCTTGAAACCCACCGCCGCAGGTCCTGCGGGTAACGATTCGCTCTTCACCGTCCGCCCCGGCATCAGCGCCGAAGAAGCGTTGCTTCACGTTTCCATGCTGCTCAAGTCCGCCGAGGAGGTCTCCGACGAAATCACCGAACACGCCAGCGGTATCGAGCGTGGCCTGATCTGGTCGCTGGTGCATTCCGTGGAGATGGCGCGCGGTGTGGTGGATGCCTTGCTCGACGGTAATCGTCGCTGATCGACAACGGCCCGCTGGCCGCGATCCTCCTTGAGATTCGCGGCTGGGCGGGCCAGCCAAAACGGATTCATGGCGCTAGTCTGAGCGCCGGTGTTCTGTCCCTGACGCTGACCCTTTTTTCCGAACGGATTCCGGCCCTATGTAAATCAAACACTTACAAAGGTCTCTAGAAAGAGGAGTAAATATGGTGTCCAGCATGATTTCTCTTTGAAATCATGGCGCTATTGGGATATCTGTCTA # Right flank : GTTAATCCATAGCATCAGTCCGCGTTGGGAGATAACACCGCGACCCAGTTCCCAATCTCACTCCACAACCATGCCACCTACCAATCCCACCCCTTGTCATATCCCCTTCATCGCCGCCTACTAAGGTTTGCTTTTGACATTAAGTCAGGGAGCAACCATGAGCGATTTCACTCTCGGTCGGCGGCGTTTGATTCAGGTGGCGGGGGCGGGGCTGTTGCTGCCGGGGTTGGCGCCGGCGGTGATTGCCTCGGGCAAGGACCGGCCGAAGATGGTCGATGGCGTGCAGTCCGGGGATCTGCTCGGCGATCGGGCGATGGTCTGGAGCCGTACCGACCGGCCGGCGCGGATGGTGGTGGAGTGGGATACCCGCAGCCTGTTCAGCAATCCGCGCAAGTTTGTCTCCCCCCTGGCCGATGCCCGCACTGACTTCACCGCGCGGGTCGAGTTGGGCGGGTTGCCCACCGACCAGGCGATTTTTTATCGGGTGTATTTCGAGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5453114-5453981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027715.1 Pseudomonas chlororaphis subsp. aurantiaca strain M12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5453114 28 100.0 32 ............................ GGGCGATCATGAACAGGCGTTCACGGCTAGTC 5453174 28 100.0 32 ............................ GACTACAGCGAACTGAAGCGGCTAGCTGAGGC 5453234 28 100.0 32 ............................ GTCCACTCGTCATTCGTCAGTCGAGCCATGAG 5453294 28 100.0 32 ............................ ATCGCGACGAGATCATTGCCGGCTGACTTTGT 5453354 28 100.0 33 ............................ TGACGCCGGGCCTGGCCCGGGAGTGGCTTGACC 5453415 28 100.0 32 ............................ AAGAAACCCGACGCCGACAACGTGCTCAAGGC 5453475 28 100.0 32 ............................ GAGAAAGAGCGTGACGAAGCGCGGGCCAGACT 5453535 28 100.0 31 ............................ GTACCAAAAGGCCGGGAAAGACGGGCAGAAA 5453594 28 100.0 32 ............................ AGTTCGCCAAGCACACGCTCAAGGCGCGCCAC 5453654 28 100.0 32 ............................ ATTCGATCAGATCAGAAAGCGCCAGCGGGTCC 5453714 28 100.0 32 ............................ CTCGGTAGATGTTCTGGCCAATGAACAGCAGT 5453774 28 100.0 32 ............................ CTGAGCATTGCCCGGCGAGTCATAGCCGGTCG 5453834 28 100.0 32 ............................ AAGAACCGTCACGCCTACGCCGATCAACTGCC 5453894 28 100.0 32 ............................ TGTCCGCAGCCTTCCAATTCGATAATTCATTT 5453954 28 67.9 0 T..........C.........CCGTTCC | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCCCTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCATGTACAACCGAGCGAACTCCGCGCAGTACCAAGCCCGGTGCAATACCGACATGTCAGCCGCGTGCAGATTGACAGCAACCCCGAACGCACTCGTCGACGCCTGATCAAGCGTCACGGGATTACCGAAGAAGAAGCTCGTCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAACGGCCAGACCTTCCGCCTGTTCGTCCGTCATGGTCCATTGCTCGACACACCACAGCCAGGCAGTTTTGGCAGTTATGGTTTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTCCGCCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCTCGAAAAAAGCCTATAAACCCGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : CCTTCTCTACGGCTCAAAAACGCACCCTCAACACACTCCCCAACCACCTCCTCCCAACATCCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACGCGGCCTCGCTCTTGGCTTAGATAGCCGCCATGTTCCAGGTAGCCAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAAGAATGCCGAGGTGTGGGACGAGAACGGCCAGCGCTACATCGATTTCGTCGGCGGTATTGGCGTGCTCAACCTGGGGCATTGCCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAACGCGGCGCCCCACGGACCCTATGTCGAGTTCATGGAGCGGCTGGCGCGTTTCATGCCCTTGAGTTACCCGGTCAGCGGCATGCTCACCAACAGCGGTGCGGAAGCGGCGGAGAACGCCTTGAAGATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //