Array 1 358-1946 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXM01000305.1 Pseudomonas aeruginosa strain VET-68 PA2_F7_NODE_316_length_2026_cov_26.0756_ID_631, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 358 28 100.0 32 ............................ ATCACAGTCGATACGGCCCCTCGGCCCGTCCA 418 28 100.0 32 ............................ TTGGCGGAAGTGGATTGCTCACCATATAGCCG 478 28 100.0 32 ............................ ACCTCCCGCCTTCCTGGCCTTTAGCATGGCGT 538 28 100.0 32 ............................ ATGATGCCCAGCTTGATGGCCTGGACTACCTG 598 28 100.0 32 ............................ TTTCACGCCTGCCATTTGCTGAATTCCAAATC 658 28 100.0 32 ............................ TGGAAAAGGCCAAGGTCAGCCAGTCGGACATG 718 28 100.0 32 ............................ GCGCCAAGCGCCAACTGCGCAAATGCTGAAAA 778 28 100.0 32 ............................ TCGCTCAATCGCCGTCGCCGGGTCAACTGACG 838 28 100.0 32 ............................ CGGCAGAAAAACGGATCGGTCGCGACTTCGAA 898 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCTGGCTCAAACAC 958 28 100.0 32 ............................ TGCTCGATGAGGTAAGCAGCAAGCCGGCCCAT 1018 28 100.0 32 ............................ AGCTCACGCAGGAGCGACCAATACCGCTTGTT 1078 28 100.0 32 ............................ ACTTGCAGCGCCGCCGCGTCGTCTTGCATGCG 1138 28 100.0 33 ............................ TACCCGGACATTAGACGAAAACTGCGTTCCGGT 1199 28 100.0 32 ............................ ACCACCAGGCCCGCGGTATCACCCGTCTCGGC 1259 28 100.0 32 ............................ TGTTCGAACGCCACATCATGTACCGCCGTCTC 1319 28 100.0 32 ............................ TCCACAAACGCCACGGCGAAGGCCAGGATGCT 1379 28 100.0 32 ............................ CGACGTCTCCACCGGCGGCATCGGCATGGACG 1439 28 100.0 32 ............................ AGCATGACGACCGGCGCGGCGGCTGTTACCGC 1499 28 100.0 32 ............................ TTGTCGATCGACTCATACGGGAGATGGAGGAA 1559 28 96.4 32 .C.......................... GAGTACATGGTCGACCTGCCCTGGCGCTCCTC 1619 28 100.0 32 ............................ TTTGACGGTCGCTCCAGGGACAGCCCAAAGGC 1679 28 100.0 32 ............................ TCGCGGTGACGGGCATGACGGGCGCTGGCAAG 1739 28 100.0 32 ............................ ATCGCCGCACGGCTCGCGCGATCGTATGTACT 1799 28 100.0 32 ............................ AGCCGGCAACGGAAACATCGTGCTGGCCGCGC 1859 28 100.0 32 ............................ ATGAACACTGAACTTGCACCCGTTGAAATCTA 1919 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21233-22461 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXM01000148.1 Pseudomonas aeruginosa strain VET-68 PA2_F7_NODE_55_length_30827_cov_16.2998_ID_109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21233 28 100.0 32 ............................ AGGTGCATAACGAGGTTCGGCACGACTTGCTG 21293 28 100.0 33 ............................ TTGCTGCGGGCCGTTACCGGCCTGGGACATGCT 21354 28 100.0 32 ............................ TTCAAAAATTCGCCCAGGTGATCCCAGATGCG 21414 28 100.0 32 ............................ ACTGGGCGAGCGATCAGATGGAGGATTAGGCG 21474 28 100.0 32 ............................ TACAGACTACTAGCCCCTCCGAAGCCCCATCC 21534 28 100.0 32 ............................ CTGCTCGGCGCCCTCGGCTTGCTCCTGTGGGT 21594 28 100.0 32 ............................ TTGCAGCTCGTCGACGCCGTAGACGTTGATCT 21654 28 100.0 32 ............................ TACCTGCGCGGCCTGTCTACCCAGCGTATTGG 21714 28 100.0 32 ............................ AATAATTCAGAGTCCAGCCTAGCGCTGGGCTT 21774 28 100.0 32 ............................ TTCGTCAAGAACTACCCTGGCGCGTATCTAGA 21834 28 100.0 32 ............................ TCAACCGCGACGCCCTCTTTGTTGTACTGGTC 21894 28 100.0 32 ............................ GACCGGCGTTGTCCATTTTCAGGAATTCGGCC 21954 28 100.0 32 ............................ TGTCCGAAGCCGGCGGCGATTGCGTGGGCGTG 22014 28 100.0 32 ............................ GCGATCATCGAGTCATAGTGCGCGGCATCGCC 22074 28 100.0 32 ............................ AAAAACATCGGTCGGCACAGTCAATGGCACGC 22134 28 100.0 32 ............................ TTAGTGGTTGGCATGGCGAGTGATGCCACGTA 22194 28 100.0 32 ............................ ATCAGGACGTGCCAGATGATTCCGCCAGTGGA 22254 28 100.0 32 ............................ CTGCCCTATGACCCCCTGGCGAAGGGCGGGAT 22314 28 100.0 32 ............................ CAGGGCAAGCGGCACCGTGTCGCCGTCGGCGA 22374 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 22434 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCTTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12257-11569 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXM01000069.1 Pseudomonas aeruginosa strain VET-68 PA2_F7_NODE_142_length_12613_cov_13.7794_ID_283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12256 28 100.0 32 ............................ AGGCAGTGATAGGCCCGCTGCATGGCGATGAT 12196 28 100.0 32 ............................ TGAGCGCGTCTGGACGACTGTCACCAACGAAA 12136 28 100.0 32 ............................ ATCGACCACGCCAAATTCACCGCAGTAACTGC 12076 28 100.0 32 ............................ ATCGTGCCGGACAGCAGCAGGATGCCCAGGAC 12016 28 100.0 32 ............................ GTTCGAGCCTGGCTGCGTGCGGGCGAGTTCAA 11956 28 100.0 32 ............................ CGATGCCGGTGCTCGACGGCCGGGGCATCCTC 11896 28 100.0 32 ............................ TCTACAACGGCCCCGACTACACGCGGAACCTC 11836 28 100.0 32 ............................ GGCAACGGCGGCCATCACGAACACGCGGCGGC 11776 28 100.0 32 ............................ ACGTAGGGTTATTCGCGCCCGTTCCACCCAGG 11716 28 100.0 32 ............................ TTGCCTGATCCCTTGATCGGGAACCTTGATAT 11656 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 11596 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //