Array 1 534707-533711 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698602.1 Dialister invisus DSM 15470 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 534706 25 100.0 49 ......................... TGCTTGAGATTTTCATGATGTCCTCACTTTCCGCCCATTATAAAAAAAG 534632 25 100.0 52 ......................... AGGCAAACGGCATTGAAGTCGTCGTGGACGATAGTAGCTGTGATAAAAAAAG 534555 25 100.0 49 ......................... AACGTTGGTACTGTAGGGCACTAACTCAACTTGCCCGATATAAAAAAAG 534481 25 100.0 48 ......................... TTCAGCATATGGTACAAGTTCCAGTATCCCCACGGCGTATAAAAAAAG 534408 25 100.0 49 ......................... TTTGCAAGAACCTGCCAATAACGCTACTGATTTTCATCAATAAAAAAAG 534334 25 100.0 52 ......................... GACTTTTATTAAATTCCCCTTTATGTTGGGGAACATGAGGCGATAAAAAAAG 534257 25 100.0 49 ......................... CGTCGACGACGACAGTGACACCACAGCTGGCGTCCTCATATAAAAAAAG 534183 25 100.0 48 ......................... GCGTACATCAACTTTCTTTCCGCTGTTCAAATAAAATCATAAAAAAAG 534110 25 100.0 47 ......................... CTAAGAATTTTTTTCTGAACGCATTCTGATATTTTGTATAAAAAAAG 534038 25 100.0 51 ......................... GTGTTTTATCTTGTCTCTCGTGTCATCCATATCTATATACCATAAAAAAAG 533962 25 100.0 52 ......................... CCAACGTGGTCAGGAAATACCTGTCCAACCAGGAAAAGGGAAATAAAAAAAG 533885 25 100.0 52 ......................... TAGCGACGGCGATCACTCCGTTCGGGCTCCCCTCGATATTGAATAAAAAAAG 533808 25 96.0 49 ...........A............. GCCAGATCATTAGGATTATTCGTTTCATACTTGCGGACAATAAAAAAAG 533734 24 84.0 0 ......T..........-.A....A | ========== ====== ====== ====== ========================= ==================================================== ================== 14 25 98.6 50 AATCCCCGAATGAGGGGACGGAAAC # Left flank : AAGAAATAGAAATCAGAGTGCGGCCGACAGACGATAATCGGTATATTGTTCTCATCATTTATGACATCACGGATAATAAAAGAAGATTATCTATGGTACGCTGTCTGGAGCAGTTTGCCGTGCGCGTGCAAAAATCCGCATTTGAAGGATTTCTGACACCCAAACAATACGAATGTATATCGGAACTGGCGAGCAGAATCATAAATGCGGAGCAAGATTCATTGCGTATTTATATTCTCTATGACCATACAAGAGTAAGATCGTGGGGCATAGGTGATATAAAAGAAGACGATGTGATAATATATTGATTAAGAGGAATTGGAGACGGTACAATATGGATGAAAAAAAGATTTAATCCGCGCCGATGCCGATGGGTACGGAGAGAAATGTATGGATTGCGTCAGAGGGGAGCCTTTTTGTGCAAGGAAATGGAGGATCCGCCGAAAGATAGCAAAAATGTTCAGACTTGGCGGCATATCATAACGACAGTATAAAAAAAG # Right flank : AACGATGATGGAGTAATTTCAATGTTTCAGTATGCAGATTGCATTTGACTATTGCATTTCTTTTTACTTACAATAATAAGAAAGGAAGAGAGTGGTAAATAGAGAGGCGCTATGGGAAATACAGCTTTCGGACGGATGGGTGAGGATCGGGCTTGTTTGTACCTGGAGGAGAAGGGGATGACTTTGGTCACCCGGAATTTCAGGTGTAAACATGGGGAAATCGATCTCATCATGAAGGACGGAAGCGTTTTTGTATTTATCGAGGTAAAGACCCGGCGGAGCCGTTTATATGGGGAACCGATTGAGGCGGTGACTGTGTATAAGCAGCGGCATATCCGTTATACAGCGGAGGTATTTCTTTTAGCGCGTCATTTGCATGATGTCCGGATCCGTTTTGATGTGGTGGAAGTCATGATGGCGCCGGGGCGTGCGGTGCGCTTACGTCATACAAGGAATGCGTTCTGAGAGAGGGAGATGCCATGTTTGCGCAGGTGTTTGGG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGAATGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 545268-544279 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698602.1 Dialister invisus DSM 15470 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 545267 28 100.0 32 ............................ CTGGCGGCTTAATTCCCGCGAATCAACTGCAC 545207 28 100.0 32 ............................ GATATACATATACGCATTATCGGTAATTTCAT 545147 28 100.0 32 ............................ ACAGCACTATCTACGGTTATAAAAAACTGATC 545087 28 100.0 32 ............................ GCAAAATTTAATGATTTATTGTTATCAGAAAG 545027 28 100.0 32 ............................ AGACCGTATGCTGCAGAAAAGAAAAAGCCAAT 544967 28 100.0 33 ............................ TACCAACAGGAAGCCGTTGAAGCTGTTATGCAT 544906 28 100.0 32 ............................ TATGTATGCTTTGATGAATAAAAAAGCTACTC 544846 28 100.0 32 ............................ AAATGCCGATGTAGTCTCTATAAAGTCCCAAT 544786 28 100.0 32 ............................ TTCTGGGAGAAATTGCCGCCGGGCAACCTATC 544726 28 100.0 32 ............................ GTACGCTTCGGCATTGACGGATTCCATGCCGT 544666 28 92.9 32 .................C..C....... TGAATAGTCATCTTTCCGCCGTTTACCTCAGC 544606 28 92.9 32 .................C..C....... AGTTGCTTCCGTCTCCGCTCACCCCTGCCGGA 544546 28 92.9 32 .................C..C....... ATGTACGCCAAACCATTATACGGAAGTGATTT 544486 28 92.9 32 .................C..C....... AGTTGCTTCCGTCTCCGCTCACCCCTGCCGGA 544426 28 100.0 32 ............................ ATAACATTTCCGGCGGATGCCACAAAATTGGA 544366 28 100.0 32 ............................ GTATACTTGAGCGTTTCTGCAGATAGATGCGT 544306 28 85.7 0 .................C..C..G..G. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.5 32 GTTAACTGCCGCATAGGTAGTTTAGAAA # Left flank : TGAATACATTTGTAAAAGGTGCTGCGATTCATATTGAGTACCTTACACATAAGTTTGATAGGATACTTATTTTGATATGCTGTTATGAAAGTAACGATTGCGGTTATTGTTCTTTGGCGAATATGGCTGTAGCTTTTTTTAATATTTCATTTTCCAGTTCAAGTTCATGTATTTTCTTTTGGAGTTTTTGATATTCCTTCATAGAAATAGTTTGCTTCTCATTTACTTGAAGAGTAGGAGCATAGAGCTTCTTCCATTTGTAAATTGTTTGCTCGACTAAGCTATATTCATTTGCGAGCGCTTTAACTGATTTTCCGGAAAGGTGTAAGTTTACAATCTGTTTCTTAAATTCCTCAGAATACCTCTTGTTGTTATGCACCATTTGCAACACATCCTTTCCTATACAAAAGTTTAATGTGTCGCATTTTATGTGTCCACTAATTTATACTAACACCAGTAGTTTAGAAAAATCTTATAAAATGCCGATAGCTTTTATAGTA # Right flank : GGTTCGGTTTTGTTTATCTGATTTGTCACTTTAGAGGAGGATTTTCATAAATCATTAACTTGTTTTGAAGTTTTGGGTATGATTAAATATAGTGTAAAGATAAGATTTTATTATGTGATGGTGAGGATGAGGAAAAATGAGTGGGAAAATTTCTTTAGCGTTAAAGGCGGGACTGCTCCATGATGTGGGGAAGGTATGTATACGTGCTACACATGAGAAGACAAGACATTCTGTTCTTGGTGCGGATTTTATTAAAACATTTTTAAAGGATACAGAAGCAGATGAGCAGCTGCTGCGCTGTATAAAATATCATCATGGAAGGGAATTGTCCGGCGCTGGATTGAGTGCCGATGATCTGGCATATGTTATATATGAAGCGGATAATATTGCAGCCGGAGCAGACAGACGGGAAGTGGAAGGAGATCTTAATGACAGGGGTGTGAAGTTTGATTCCGATTTGTGCCTGGAAAATATATTTAATGTCTTTTCGGGGGACGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGTAGTTTAGAAA # Alternate repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 548330-546554 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698602.1 Dialister invisus DSM 15470 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 548329 28 100.0 32 ............................ TTGACAATTATACGCATAATGCGTATAATATA 548269 28 100.0 32 ............................ TTTTTCGAAGTTGGCCACAGCGACGTGTCGTG 548209 28 100.0 33 ............................ ATTCATCAAGCTCAAGTTTATTTACTTGTACTC 548148 28 100.0 32 ............................ GTAAGCCGCACGGGCTACCTTGAGCCCGTTGA 548088 28 100.0 32 ............................ TGAACGGGAACGCATATACATTTTATGCGTTT 548028 28 100.0 32 ............................ TTGGGGGGAAGCAGGAAATGACTGCAATAAAC 547968 28 100.0 32 ............................ TGAAACTTGCGAAACGACAAAGAAATCTCTGG 547908 28 100.0 32 ............................ ATAGTATATCCTCTGTTTATGTACGTGATCGA 547848 28 100.0 32 ............................ TTAACCGGCGCTTTTTAAATAAAAGGAAGTGC 547788 28 100.0 32 ............................ ATTCAGAGAACACCTGTTCCCTGTTAATTTCA 547728 28 100.0 32 ............................ TTTTCACTTGGAAATGACATTTATTTTACTTT 547668 28 100.0 32 ............................ TTTTCACTTGGAAATGACATTTATTTTACTTT 547608 28 100.0 32 ............................ GCGAAAAAAGAGGATTTTGACGCGCGGCTCTC 547548 28 100.0 32 ............................ ATGAGGCAATGGAACAACATTGCCTTGTGCGG 547488 28 100.0 32 ............................ ATATGGGGGCTTTTTTATTTACTCAGGAGGTA 547428 28 100.0 33 ............................ TCTTCTGTGTTGTCACATAGATTAACCGTATAT 547367 28 100.0 32 ............................ ATCTTTTAGCTTGCGGTCTGCAATAACTTTCA 547307 28 100.0 32 ............................ GCCGTCATCGAAACAGACGCTGGAGCGTGCAC 547247 28 100.0 32 ............................ AGATGAATACCCCTGCCCCCGATGTATCAGAA 547187 28 100.0 32 ............................ TATTTCAGAAAAGGAGCTGATTTTATTATGGA 547127 28 100.0 32 ............................ TCTCAATCTTTCATGTAATACTGACTCTCGAA 547067 28 100.0 32 ............................ AAATCAAAAGCATTACATAGCTTGCCGCCTGC 547007 28 100.0 32 ............................ TGCAACAAAACTCTTTCTGATTGCCGCAAATG 546947 28 100.0 32 ............................ TTTTTCGGCGGTAATTGCGTCATCGTACAAGA 546887 28 100.0 32 ............................ ACGCAAATTTCACCGAAACACCCGCAGGACCA 546827 28 100.0 32 ............................ AAATTGTAAAAATATGGAGATGAAAGAAATGA 546767 28 100.0 32 ............................ AATACGTCAGAGTCAGCATCCAGCAGTAATTC 546707 28 100.0 32 ............................ TTTTTTTGTCATAATCCCACTGCAGCATACGT 546647 28 100.0 32 ............................ AATTGCCAGTAATATTGTATATGTTGTTTTAT 546587 28 100.0 0 ............................ | C,G,CTGG [546556,546558,546563] ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTAACTGCCGCATAGGTAGTTTAGAAA # Left flank : TGGAAAGACTCAACCTGTCCAAAGTACTGGGACGCCTCCTTGATTATGTGCACTGTACAAGCATAAGGAAAGTGCCGGAGCGCAAGCTGCGGGGGTATGCCGTGTATAGCAGGTACCAACCGGAAGGTTCAATCTGGGTGAAAGCGAGACGCTATGCAAAAAGACATCCGGGAGTAACGATTGAAGAGGCTGCCCGGCTTCTGCAAGGAAAGAGAAAATCTGTCAGACTGCCGTACATACAGATGAAAAGCCTTTCCCGCGGAGGAACATTTAGCCTTTTTATAAAAAAGCGGGTAGAAAAAGAATCCGCCTTGACAGAATGCGGAACCTATGGTTTAAGTAATAACAGAACCGTTCCGGAATTTTAACCCAAATTTTTACGGCATTTGAAAAATGCGATTAAATCAATCTATTTCAAAGCAGGAATAAATTTGGGTCAAAGTGGGAAAAAGATGTATAAGCGCACGTGCTGTCGGCTTCTTTTTCCGCTCCAGCATCGG # Right flank : TATGGTGGACACTAAAATTGCGACTTTTATGCCACACTCCCCGCATGCACTTCATCCGGGGTCTGATAGCCAAGGCTACTATGCTTTCTCCTGTGATTGTACCATGACTCGATATATTCGAAGATACTCTGATAGGCATCTTTTGAATCCTTATACGTTTTACAATACACTTCTTCCTTTTTTAGCAAAGAATGAAATGATTCAATACAAGCATTATCGTAAGGACAACCTTTTCGACTGAATGAATGCCGTATTTTATGATTTGTAAGATATTGTTCAAATAATTCACTTGTATACTGCGTCCCTAAATCGCTTTGAATAATGATTCCTTCCGTATCAGAAACATTCATACAAGCATTACGCACAGCCTTTACTGCAAGTTCAGCAGTCATTGATGTATCATAAGCCCACCCGATAATCCTGCGACTATATAAATCCATTACTGATGCCAGATATGTCCAACCGTCTTTTTGTGTGAATATATAGGTAATATCTGTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 560802-560232 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG698602.1 Dialister invisus DSM 15470 Scfld0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 560801 28 100.0 32 ............................ GGGAATTTGCGGAAACACCGTTAAAAAACATG 560741 28 100.0 32 ............................ AAAAGGCGAAAAAGGAGAAAAAGGAAATACGG 560681 28 100.0 32 ............................ AAAATCGCATATTTTTAAAAGAAAAGAGGACA 560621 28 100.0 32 ............................ ATGCTTTGAAAGCATAATAGTCTATGTTTTCT 560561 28 100.0 32 ............................ TCCATTGTAACAAAAACAGGAGGAATAAACAA 560501 28 100.0 32 ............................ TATGAAGTTGTTGAAAACTATATGGACTTCAA 560441 28 100.0 32 ............................ ACTTTCGCACACGGAAAAGTCGTTTCCGGCAT 560381 28 100.0 32 ............................ GATTACCGCACAAGCGACAGCAAGAGCGGTAA 560321 28 96.4 34 ....................T....... CGTTCGTGATCAGTGGCAGCTGTATTCCTTTTTC 560259 28 89.3 0 ....................G...T.T. | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.6 32 GTTATCTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTGAAGGGAGTAGGACATGTGAAGGATCTGTACCCGTAGTGAGGCAAACGGTGAACTTTTTCTTTTACGATTTGAGTTATCTCGGCAAGTGAGCATCTTCTGTCCGGCTTTGCTGACTACATCCTTATAAAGAAGAAGGCTTTCTGCTTACGCTTTTGCTTCATAAGGTATTTATTGCGAACCGGTTTTATAAAAGAAATTCTGCCGGTAAGAATAGGGTTTGGGTGAGCCCTTTTATTCAAAAGAAAGGAAGTGAACCATTTTTAAGAGAGCGAAGCGACACTATAAAAGCGTTTGAAACGCCATACCTGGACGAAAGGAGCGGTAAGGTATGACGGAGGATAGAGGAAGTATTGAATACTAAATTTTAACTCAAATTTTTATGGACACTGGGGAATGCGATAAAACCTATATGTTTGCAAAAGAAGATAAATTTGGGATAAAATAAAGAAAAAAGGATACGGCCAGACAGTATCGCAATATCTTTTTATTTTTTACA # Right flank : CTTCATAGTTCTTTTTTTATGGCTGACGTCTGATGGGGGTCGGCTTTTTGTGTTGCGCGGCTGATGTTGCAGGGCGTATGTGGCGAAGTGGGGGGGCTTTTTTGTCAGGGGCCGTTTTTCCTGTGCTATAATTTAGGCATACTTATGTAAAAGAGGTTTATCATATGGATATATATGGACAGTACAAGGATTCTTTAGAGGCGGTCATGCGGATGATGGCGGTTTCCATAGAGCGGTATGCGAAGGCACATAAAGATAATTCGGGGGAGTTGATTTATGAGCATCTGCGTTACCGGCTGAAATCGGAGAAAAGCATGCAGGCGAAGCTGGAAACGCGGGGATTGCCTCTTACCCCTTATTCGGCGCTCTGCGAGGTACGGGATGCCATCGGGTTCCGTGTTGTTTGCCGCTTTATCGACGATATTTACAAAAATATTTCACGAATTAAAAACTTGCCGGGAATCACCGTGGTGAAAGAAAAGGATTATATACTGGATGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //