Array 1 56088-58100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLD010000022.1 Roseburia intestinalis strain J1101437_171009_C5 NODE_22_length_75937_cov_43.4692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56088 36 86.1 29 T..C..T..T...A...................... CGCTAGGATGTGATCTTGATACCGTGATT G,C [56092,56101] 56155 36 100.0 29 .................................... CGCTAGGATGTGATCTTGATACCGTGATT 56220 36 100.0 29 .................................... CGCTAGGATGTGATCTTGATACCGTGATT 56285 36 100.0 30 .................................... CCATCAATTTTTCTTCTGTATCATCATCCG 56351 36 100.0 30 .................................... GGTATCTCCGTAAATATAAACGGTTGTAAG 56417 36 100.0 30 .................................... TATCATCCTTCAAGTACTGGGGATTCACTT 56483 36 100.0 30 .................................... TTGAGATCGTTCAGATCGGATATGACAAAT 56549 36 100.0 30 .................................... CAACCCGACCCGTATATAGATATTGCACAT 56615 36 100.0 30 .................................... AAGCCTTAAAATGGCTTATACGCGTTCACT 56681 36 100.0 30 .................................... AATCATCCGGCGGGATGTCGAGATTCCAGT 56747 36 100.0 30 .................................... ACTTATGCATGTAAATCCTGTTTATTCCGG 56813 36 100.0 30 .................................... ATCTGTATTTACGCCCGCTTCTTGGAGTGC 56879 36 100.0 30 .................................... TCCAACTCCCGACAGGATACCGCCAAGTTT 56945 36 100.0 30 .................................... AGTATTGAAGTTCTTTAGAAAATAGGAGTT 57011 36 100.0 30 .................................... TGAGACCATACATGAGGATGTCTCCTGCAA 57077 36 100.0 30 .................................... GGTTTTGTCAGCACCTTTGTAGCCTTACAA 57143 36 100.0 30 .................................... CACTAACCTGTGTAGATAATGTCTTGTTAA 57209 36 100.0 30 .................................... TCGCAATATCCGTCTATGGATATGCAGGCA 57275 36 100.0 30 .................................... CAATAAGGACGCATATCATTCAAATGCCAT 57341 36 100.0 30 .................................... AAAGAGTATATAACTCTTTTCTTCTGATAC 57407 36 100.0 30 .................................... TTTTGCGTAGTGAAAACGGAGTAGAGATTT 57473 36 100.0 30 .................................... ATCAATGCTTCTACTACGGAATTATCTGTG 57539 36 100.0 29 .................................... TGCATAGGCTTCGTAATTGTTGCCGTTCA 57604 36 100.0 30 .................................... CCAAGGTTCCCGTCTTCGACTTTTACATTT 57670 36 100.0 30 .................................... GTCTTGTTGTGAATAGGTCGTATTGCCTTT 57736 36 100.0 30 .................................... TGAGTACATAGTGGATATTTACAAAGAATG 57802 36 100.0 30 .................................... TTGCGTGGTGTGCTGCTGTACCCTCTTTCA 57868 36 100.0 30 .................................... GCAAATGATGAATGAATTGCAGGCGTTGTA 57934 36 100.0 29 .................................... CTTTCCTACTCCGATTGCTACCGTGTCCC 57999 36 100.0 30 .................................... TTTACCAATCTTCCCATAGGAATACCGATT 58065 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.6 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : TTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTTTCGCCGCAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTTCCATAGTATGATATTAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTGAGAAACAGGAAACTTTGATTTACAAGGTTTCCTGTTTTTTTGTTGTAGTGTAAAGGTTGATTACGGTTTTTCCGTAATTTCAATATACT # Right flank : TAGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATCGATTCAGGGGTATCCTCAAATGTTTTTGTTCCCAACATGACTTCCATAGACTCATACTGCTTTTCTGTTAAAACCAGCGCACGTACAGATCCTTTTATAGGCAGATTTTGTTTTAAACGCTGTTTATGCATTGCAACTGCATCCATACCATTGCATATCCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAACAAAAACTTACGAAATTTCGCGGCATCCTTTTTCTCTTTTGCAGTTACTACCGGCAGATCAAAAAACACTAACATTCTCATAAACTTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAGAGCACTACTGTAACTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 77574-78181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLD010000005.1 Roseburia intestinalis strain J1101437_171009_C5 NODE_5_length_164520_cov_41.2359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 77574 36 91.7 37 .....G...AG......................... ATGTAATTAACTTTCATTTTTTCCTCCACTATAATTT 77647 36 88.9 35 .....G...AG.............T........... TTATCAAAATTTACAATTACAAGCACAACTGGTAT 77718 36 100.0 38 .................................... AGGCACGTCTAAATTCTGCAAAGCGTTCGCCAAGCGCC 77792 36 100.0 32 .................................... TGTTCAGATAAACCATTGTGTCCTATGAAATA 77860 36 97.2 37 ...............T.................... ACTTCCTGAATTTCAGTCTTAGGAACTTCTACATAAA 77933 36 86.1 35 .....G...AG.........A.A............. TATGTACTTTTCAATCAGCTATCAACCTTCTTTCT 78004 36 100.0 35 .................................... TGTAAAGCCTTTATTCAATTATCAAAGTACCGTTA 78075 36 100.0 35 .................................... CTGTGCAGTTGCTTCCTTACTCATTTTTGTAAAGT 78146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 96.0 36 ATTGAAATATAAGAACCCCGTGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTATGGATAATGTGTTTAAAAATACACTTGGAAAAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATGACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGGATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCCTGTGTTTTAGGAGGTGTAAGGGACAGT # Right flank : CCTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATCTTCAGTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAACCGTTTTCAGGTAAAGTACAAGGATGGAATGATAAAAAGTATTCCAGCAGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGAGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATTCGCAATCAGGTTGTTGTTTTGCGCAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATATAAGAACCCCGTGGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA //