Array 1 35194-32009 **** Predicted by CRISPRDetect 2.4 *** >NC_019765.1 Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 35193 37 100.0 38 ..................................... TTGGGAACTACAACTAATCTTTATTTACAACTTGATTA 35118 37 100.0 37 ..................................... AAAATTGCTCCCCATAATTCTGCTAAAGTTTCAGCTA 35044 37 100.0 36 ..................................... ACTTCCAATGATACGGCAACGGTTGAATTACCATGT 34971 37 100.0 36 ..................................... ATTTCTGGTGGAGTAGTGCGCCCATTGAATGAAATA 34898 37 100.0 33 ..................................... CTCAAAAAGCTACAGCCAGCCATTGAAAAAATC 34828 37 100.0 38 ..................................... AAAAGTAAAATCAATTTCTAAATAATCAACTACTTTGT 34753 37 100.0 37 ..................................... CTGCGGATACGGCTCAAGCTGCTGTGGTAAGACTTGA 34679 37 100.0 41 ..................................... GGCCGCAATTAAAACAGTTCAAAATTTAATCGATCTGTCTA 34601 37 100.0 35 ..................................... AGAAGCTTGTAGTTCTACTGGTGCTGTAGTTTCCA 34529 37 100.0 35 ..................................... GATCTATTGCTCTTGCTCTCTCTAATTCTCAAATG 34457 37 100.0 38 ..................................... ACTAAATATACAATAGCAAATCTAGCTTATTTTTCTGG 34382 37 100.0 35 ..................................... ATTGATTGGTTTGATCAAAAAGATAACTGGGATAG 34310 37 100.0 35 ..................................... AAAATTGGGAAGAAGGAGAAAATATATATTTTCAA 34238 37 100.0 35 ..................................... GTAGTTAAACCCTTTAATATTTTTCCAGTTATTAA 34166 37 100.0 37 ..................................... TATACCGCCGATGATGGTACTACTGAGTATGTACTAC 34092 37 100.0 34 ..................................... AGCATACCAAGCTACTTTAGTTTCATTCTCCACT 34021 37 100.0 34 ..................................... TTAGAATCAGTAACATCTTCAAATAAATCTTGAA 33950 37 100.0 37 ..................................... AAAGAAGAACTAAGTAAAATGTTCGCTCAGTACTTAC 33876 37 100.0 35 ..................................... AAATAAAGTATTCTGAGGTATTTACTTTTGAATCG 33804 37 100.0 37 ..................................... AGCCAGGAGTGCTGCACCTGCATTAGATGCAGCCGAT 33730 37 100.0 33 ..................................... CAAAAGAACTCAAATCGCGATCGACGGAAGATA 33660 37 100.0 35 ..................................... TAAAAGATTGCGATTGTAATCTAAATTCTCTCTAA 33588 37 100.0 42 ..................................... TATCAACGCCAACCCCGAAGTCGATCAAATCTTGCTACCTAC 33509 37 100.0 36 ..................................... AGTACATTTAAATCATCTTGATCTAGATTTTTATTA 33436 37 100.0 40 ..................................... TAGCCTGTGACCAATTATGGAAAGCAATACGACCAGCAGT 33359 37 100.0 34 ..................................... AAATTCAAAAAATCGAAGCAGAAGCGAGAACTAT 33288 37 100.0 34 ..................................... TGGATTGGACAGACGCTCGAACACGGGCAAATTT 33217 37 100.0 35 ..................................... ATCAGAAAAAATTCGACTCCGAACCATTCCATCAA 33145 37 100.0 36 ..................................... TCTTCAGCTACTTTTTATCGAGCGATCGCCAAATTT 33072 37 100.0 40 ..................................... AAGGACAGGTCAACTTTTACGGGGTCGGATTCGTTTAAGT 32995 37 100.0 37 ..................................... CTTTACCTACGCCATATTGCAAACAATCGTTATAAAT 32921 37 100.0 40 ..................................... ATAAAGAGCAAATTGATGAAACTATTGAAGAGCTTAAAAC 32844 37 100.0 34 ..................................... GTCTTCGTGGTTTGAATTGGTTTGCTGCTAATGG 32773 37 100.0 38 ..................................... AATTCCATTATTTCTGCACCTTAGTTGCACGACGAACT 32698 37 100.0 105 ..................................... TTATTTATCCTCAATAACATAATACCCAGAATAGTTGCCATGTTCCTGCGACACCCGTTTGAATTGAAACTTATTTATCCTCAATAACATAATACCTTATCAAAA 32556 37 100.0 36 ..................................... CTAACTCTGTATTGCTCCTCGACGAAGGGGGGATTG 32483 37 100.0 35 ..................................... ATCACCTTTACGAGCAAACATATCAATTCCCTCAC 32411 37 100.0 36 ..................................... AGGGACTTTTGAAACGCAAGTTTACGAACGTAGCAC 32338 37 100.0 36 ..................................... ATGACTGGCAACCAATTACGTTTGCTGAGAAACAAT 32265 37 100.0 39 ..................................... TCGATAATTTTTTCCGAAGAAAGAGGAATTTCCATCTAT 32189 37 100.0 35 ..................................... CAAACTTGCGCCATAAGCAAATCTTTAAACTCATT 32117 37 100.0 35 ..................................... TACGACCTTTATCAATTGATTGAGAAAAGATAAAA 32045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 43 37 100.0 38 GTTTAAACTATTAATAATTCCTATGAGGAATTGAAAC # Left flank : ATAGTTAGTTACGATATATCTGAAGATAAGCGACGCACTAAAATTCACGATATTTTATCTTCTTATGGTCAATGGATGCAGTATAGTTTGTTTGAATGTAATTTAACCAAAACTGAGTATGCTAAACTGCGATCGCGTCTCAAAAAAATAATCAACTCTGATACCGATAGTATTCGTTTTTATTTTTTATGTAGTTGTTGTCAAAATAAGATTGAGCGCATTGGTGGTGAACTAGTTCGAGACGATACAATTTTCTTTGTTGAGTAAGATATATGCGCGGTAGGGTAGGTGTATAAAATGAGTAAAGTTATAAGTTCCTGTAAATTCTTACCCAGTATAGCTTTGCAAGCAATTGAGTTTGGCATAGTTCCGCGCACTATACAGTATAAAGGTTTCAGCAATTTTGGCTCTGTTTTTCTTGTCCTTTGTGCTATCATCAACCCAATACCGCGCAAACGAACCTTGAAAACTAAATATATCAATGTTTTTGAACTACCGCG # Right flank : TATTACGATTCTCAGCTTCTACGAAAGTTTCAAGTTTAAACTAAATCTAATTTTATGGTTAGCGAATAAGTTTCAAAATTTACTAATCAATTATCGCTATTTCTTTCTGTTTTTTTTCTTGTTTAACATTTGACTGACTTTGTTTTTGCTGTTTATCCAAATAATCATTAATTTCTTCTAGCTTCTGGCTAAAACTTTCCACAATAGCCTGCTTTTCCTCTTCATCTAATTCATCCTTGTCGATTACAAACTCATCTTTATTTATCGTCGCCTTAAAAATTTCTAAAACTTCATCATTATCTCGTTCTTCAATAGTAATAATTTTCTTCTCGTCAGCGCGATCGCAACACAACCTACAGCGATCGCCAATAAGAATTTCTGACTTTGAATTGGGGTTAATTTGCTTGTATTTCTCGCTAACATCCAGCAAGACATTAACTAGCTGAGTATCCAAATCTTCTGCTTTTTCATCCACTTGATTTTGTTCGTCTTCATCCCAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTATTAATAATTCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 534533-535100 **** Predicted by CRISPRDetect 2.4 *** >NC_019748.1 Stanieria cyanosphaera PCC 7437, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 534533 36 100.0 43 .................................... CTTGGTGACAAAATAATTAACGTTTCTGCCCATTTCAGCCATT 534612 36 100.0 37 .................................... CGGAGTAAAACCCCAGCTTCCCATTGCCATTCAAGTT 534685 36 100.0 38 .................................... AACGGTTAAGTTTCCAATTACGCCAGGATCGCTATAAC 534759 36 100.0 38 .................................... AAAGAGCCGAGAACGACATCAGGACGGGAGGGACTTAC 534833 36 100.0 46 .................................... CAAGCAACACATTCTTGTGTTTTTTTCCAAGGGTATTCTTCGCCAA 534915 36 100.0 37 .................................... CTAAAATTTTTCTGAGGTCTTTCGATAAGTCTGACGC 534988 36 100.0 41 .................................... CTTTTAAAATCTCTTGGGAAAGCGATCGCCTTCTTTGGATT 535065 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 8 36 100.0 40 CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC # Left flank : ATTTAATTCTTCATCCCTTCAAAAAAACCTTGTTACTTTATGTAATTGTTTATGATATTCCTTGTGATAAAAGAAGAAAAAAAGTTGCTGATTTGCTAGAAGGATACGGTACACGAGTGCAATATAGTGTTTTTGAATGTGTTTTGCGAAAAGAACAATATCATCAACTTTGTTCTCGTCTTAAAAAAAGGATCGAGTTGCAAGAAGATAGTATTAGAATTTATCCTCTAACGCGCCATACTCTTGATAAAGTTGAAACCTGGGGAGTAGGAACACCAGTTACTTCGCCTCCTGGTTCGATTATTGTGTAATTAAATTGATTGCGAACGATAACAAAAATGTCTGAAACCTTTATTCTTTGGTAATGAGCCTCGAACTATTACTATGACTAGCTTGTAGCTTTTTCTTTTGTTCTTTTTTACTGTTTCGGACTCTTTGAAAGTCTATCATTCGCAAACATACTCTGGACATCAGACTGTATCTGGGTTTTAATGAAGGGA # Right flank : CTCGTCGTGGATTTTTTGAATATCTTCGGAGCTCGACTTTATCCAATCAAGCAGCATAAATAGCCAGATCTCTCAAACGATTGAATAAAGAACGAGGGACTTTTATGATGTCAGTAGGTTTAGATGATATCGAAAAAGTGCTAGCCCACAGAAATCGGCGTACTAAAGCTAAGGCATCAGAAAAAGTAGGTAGAGATTTAACATACCAACTTTTTTGTCTAGTAGTCCAAGTAAAATTGGCTTGTAAACGATGAGCCAAAAGAGTAACTAGAGAAAAAAGTCCTAAAATAAGAGGGGTGGTGCGTGCAATTGCTAAATCTGACCACTGACGTTGAGTTTCCATACCCAAGTGTCTTCTAGCTTCTTCAAAAGTTACTTCTATTTGCCAACGACGCGAAAACCATTCAAGAATCTGTTGAGATTGATATCTTTGATTGGTACACAACAGAGCTTGTGGTCTAAATTTATCTAAAGGGTCGCGGACTAAAACCCAGCGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 537917-536594 **** Predicted by CRISPRDetect 2.4 *** >NC_019748.1 Stanieria cyanosphaera PCC 7437, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 537916 36 100.0 41 .................................... TCAGAAGAGATTTAGTAGCGGTATATCCCAATAGTTGTCTA 537839 36 100.0 41 .................................... TTAGATAAGTCAAAAGGCAAAATGCAAAATGCAAATATCTA 537762 36 100.0 37 .................................... TAAATAGAGTGTATGAGGCTACTACTAATAAAAGGCA 537689 36 100.0 36 .................................... TTACAGTACACATACTACGGATTATCGACAGTGCTA 537617 36 100.0 40 .................................... ATGTCGATAAACTATTCCGCATTGCAGATTTAAACACAGT 537541 36 100.0 40 .................................... TTTGATAATTGCTGCTTCAGCTATATTTAAGTGTTTGGCG 537465 36 100.0 42 .................................... AAAGTGGCTTGTAAGGATATACCTGGATACGGAGACTATCAG 537387 36 100.0 43 .................................... GTAGAAAAAAACTTTGACTCGGAACAAATTTATAAAGACTATT 537308 36 100.0 41 .................................... ATCTACTGGATGAATATTATCTCAGTCTGGGAATGGTTCGG 537231 36 100.0 37 .................................... ATGACGACAATTAATCTCAGAATATTTAAACAAAAAA 537158 36 100.0 36 .................................... TTCTTTTTCTAAAAGTTGTAAGTTGTAATCATTTTC 537086 36 100.0 42 .................................... TTCTAGACCCAGTTCACTTTGGGGGATTAGGCAGGTATTTCA 537008 36 100.0 37 .................................... ATGACGACAATTAATCTCAGAATATTTAAACAAAAAA 536935 36 100.0 40 .................................... GAAAATAACCCCATAACACAACAGGAGCATGAAATTTGGT 536859 36 100.0 39 .................................... AGAGAGAATTGCCGAGATTGCCAAGCAATTAGACCCAAA 536784 36 100.0 43 .................................... GTTCCAAAACCATCCCAGGCATTAATTCTCGTGTCGGGACAAT 536705 36 100.0 40 .................................... ATTTTGGTAATACGGCACCCCTTTATCAAGGGGTTTCTTT 536629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 100.0 40 GTTTCCATTCAATTAGTTTCTCTACAAAAGATAGAG # Left flank : CGAGTAGACTCTGCGTGTTTTAACCAGTCATAGACTAAAGGCATCTCAGCCTGTAGTTCATTAAGTTTCAGCAATCCTTTCATTGCACCACAGTGAGAATGTCCACACACTACTATTTGTTCAATCCCCAGTGCATGGATAGCATATTCAATCGTACCTCCTTCACCTCCGTTAGCTGCACCATAGGGAGGAATAATATTACCTGCATTTCTAATCACAAACAGTTCCCCTACATCTGTTTGAGTAATGAGGTTTGGATCTATTCGTGAATCGGAACAAGTAATAAACAGGACTCTAGGTTTTTGACCATGAGAAAGTTGTGCTAAAAGTTGTTGGTGGGTGGGTACATAAGTATGACGAAACTTATCAAGACCGCTAATTAACTTTTTCACTGTGGTTTATTTTCCTTGAGATCGAGGAGTGTAGAGTTATGTTTTCTATTATCCCGTAAAGATGTATTAAATAGCTAGTACCACTGTGTATTTAGAAAATTAACGAAG # Right flank : AACATCGACTCCGCTCGACTTTATCCATTGTGAGAGAAAAGTGAGGTCGAACAACGATACAGTATTTTTGAGTGTATCGTTAGGCTCGAAGCATGAGTTTTAATTTACCCGTTGAAATTATTAGTATTCTTTTACCTTTTGCTGGTCTGTTTTCTAAAAAGGTTTGGAACTACGTTCAAATCATGTTAATTGGTGCGATTTTAGCCACAGGAAAAAGAACTGTAACTTCAATATTAGAAGTGATGGGATTGTCTGCTGAGTCTAACTTCCAGAATTATCATCGGGTATTAAATCGTGCAGTTTGGTCAAACCTTCAAGCAAGCAAAATACTACTAACAACCTTAGTCATGACATTTATTCCTTGTGGCATAGTTGTCTGTGGAATAGACGATACGATAGAACGTCGAAAAGGCAAGAAAATAAAAGCTAAAGGTATTTATCGCGACCCAGTCAGGTCAAGTCATAGTCACTTTGTTAAGGTTAGTGGTTTACGTTGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCTCTACAAAAGATAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 3072158-3071543 **** Predicted by CRISPRDetect 2.4 *** >NC_019748.1 Stanieria cyanosphaera PCC 7437, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3072157 36 100.0 37 .................................... CAATTGACGCTGCTGCTTCAACTTATAGCATTACTAA 3072084 36 100.0 36 .................................... TAAATAGAACAAGTGGTTATGATTTTCAAATCTTAT 3072012 36 100.0 35 .................................... AACCAAGTCTTTTTGCTCAAGGATTATTGACGATC 3071941 36 100.0 38 .................................... TATCTTTGCGAATGTTAGCTATCTTTTTGTGTATTCTA 3071867 36 100.0 36 .................................... TGTCGACACGCACCAAAGTAATCTAAAGCTAGCTAG 3071795 36 100.0 38 .................................... TGGATCAGTTTTTTGCGGGGAATCGGGAAGGGTGACTT 3071721 36 100.0 35 .................................... GCAAAGAAAGATTCGGAGGCAGAGCTAGTTAACCG 3071650 36 100.0 36 .................................... ACACGAATGAATGGGTCATGGTGGAACCTGTTGCTC 3071578 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 100.0 36 GTGTACTAACCTTAGATGCCGTTAGGCGTTGATCAC # Left flank : TCCAAAACGTTGGCGTAAAGCTTATAAATTATTGGAAGGATATGGCGATCGCTTACAATATTCCATTTTTCGCTGCTGGCTTTCACAAAGAGATCGAGAAAAAATGCGTTGGCAATTAGAAAAAATTCTCACTCTTGAAGACGATTTAATTCTAATCCGCTTATCTCACCAGTGCGTTAAAAGTTTACCCGCTTATAATCGTCCTAATACTTGGCTGATCAATAATGAAGGGTTTCGCGTACTGTAATGAAAACAAGCACCTCTGTTTGTTGAAGGCTTGTGGTGGGTTTGAATTGTTTTGATCCTATCTAGAAAAGGTATTTGAGAGTTTTTGAGGGTCACAATGGTGCTTGAATTTTTTGAAAACCAGACGGTAAAATGATTTCAAGCATTGCTTATTGGCATAGAAATGAGTTTTTTGATTCGGAGTTGCCATTTTGTTGGAGATGCTTGTAAAATTACCTCAGAAAGCCTACCAAATCTGGATTATGGCGACTGCC # Right flank : CCTATAACTTAGAATTTGAAAGAGATCGCGTCAGGGTGTACTAACCTTAGATGTTGATGTTAATTTTTTGTTCTGTACTCAGAAGAATTTTATTTAATAACTTTTGAGTGACTACACTAATCAACTTTGTATAGATGTTTTAGTTAAGATTAACTAGATAAAATTAAACATAAATAAAATTTTGAAACGACAGAAAATCAGGAAAAATAAAATGGCTAATCAACCTTTAAATGACGCTCAGAAAAATAACCAATCTGAACCAACTAATGAATCTAATAAATCTATGATCGAACAAGCTATTAATCCACCAGAACTAATTAATCAACCTAATTTTCCTAAAAATCCTGAAGAACTAATTAGCAATCCTGGTGTAGCACCTCAAATGTTGGACGATCGCAGAGATTTGAGAGGAGATTTAACTAGAGATGAGGAATCTTAAATAATTAAATCTTTTCAAAATATTGATTTAGTTGATGAAAAAGTCAGAAGCTATAAATCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTAACCTTAGATGCCGTTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //