Array 1 199632-200513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADFFT010000002.1 Caballeronia sp. BCC1704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199632 29 93.1 32 .........................A..A CGCTTGCTGCCGAGCACGACGACGAGCGCCGC 199693 29 96.6 32 ............................G GCGACCGGCGAATACGACGAAGCGAACTGGTA 199754 29 96.6 32 ................T............ GAATACGCGATCAGCCAGCAACAGCGGGACTG 199815 29 96.6 32 ..............A.............. GGCGGAGTCAAGACGCAGACACAAGGGGCCAA 199876 29 96.6 32 ...........C................. TCGAGCCAGGCCGGCTCGTCCAGTTGTTCGAG 199937 29 96.6 32 ...........A................. GACGCGCACGGTGCGATCGGCGCCGAAATGGC 199998 29 89.7 32 ..........GC...C............. ACCGATGGAAGGGAAGACATCGGCCTGATGCA 200059 29 93.1 32 ..........T......T........... GCATCGTGCGGACTAATCGGCATTACGCCGCA 200120 28 96.6 32 ........-.................... TGGACACCACCGCACCAGATCGTAGATGAGCC 200180 29 93.1 32 ...G.......................T. GTGGCGGGCGGCATGCTGAGTGCCGGTTGGCC 200241 29 89.7 32 T...........C............A... ACCCTCTGGAATGCCTCCTCGTGCTGCCAGGG 200302 29 93.1 32 ...........AC................ TACCAGTACACGATCACGAAACGCGGCTTGGA 200363 29 100.0 32 ............................. CCGCAGAGCATGTTCGGCGACGGAACAGTAGC 200424 29 82.8 32 ..C........A...A.....C......G TTCTTGCCGCTTGCTTTATCGCGTTCCTGCTT 200485 29 82.8 0 ..C........AC...........AC... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 93.1 32 GGTTCCTCCGCGTACGCGGAGATAGGCCC # Left flank : TCGACACGTCGCGCGTGCCGCATGGGGATCGTCACGGGCTCCTGTGGCTGGAGCGCGGTGAACTGAGCGTTATCGATGGATGCCTGCATTTCGCGAGGGGGCAATACGTTGATCAGATTCCGCATCAGTCGGTATCCATGGTTCTGCTCGGCCCCGGCGGCAGCGTAACGCATGACGCACTGCGGTTGCTTGCGCGCCACGGCACCCTGCTTGCCGCGGTTGGCGCGAGCGGCGTGCGCGGTTACACCGCGTTGCCGCTCATGCCGGATCGCTCGGATGTCGCGCGGCGGCAGGCCGAGCTGTGGGGCAGCGCGCGCCGACGCCTGGCCGTTGCGCGGCACATGTATGCGCTGCGGTTGGGCGAGGTGCTGACGCATCGCGATCTGGATACGCTGTGCGGCATCGAAGGGGCGCGCGTGAAGACGATCTATCGGTTGCGCGCGCAGCAATTCGGCATCGATTGAAACGGACGGCACTCAATCATCGGGTTATGTGGGAGA # Right flank : CCATCCGGCCAACCGCGCGGCGGTAACGATCCAGGCCCCTCCGCACACTCGGAGCCCACCCCCCATGACGCCCTCATTCCACCCCCATGACGCATTCCTTCTATGTCGCGGCTTTATGTCGGCGTCTACTGAAAAGACCTGCAACGAACCCAAGCGGTCACACACCGCATCGAGAGGAACCAAAAAATGTCCACCGCCACACAGCCCCGCGCGAGCGCCGCGGCGCGGCTCGAACGCCTGCCGTTCTCGAGCTATCACCGCACCATCTTCATCATCATCGCGGTGGCCTTCTTCTTCGATTCCGTCGATCTCGGCACCATGACCTTCGTGCTCGGTTCGATCAAGACCGAGTTCGGCCTGTCGACGGCGACGGCGGGCCTCGTCGCCAGCGCGAGTTTCTTCGGCATGGTGCTGGGCGCGGCCGTCGCGGGGCTGCTTGCCGATCGCTTCGGCCGACGTCCCGTATTCCAGTGGAGCATGGTGCTCTGGGGCGTCGCGTC # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTACGCGGAGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 256006-255134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADFFT010000002.1 Caballeronia sp. BCC1704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 256005 28 100.0 32 ............................ GACACACCGAAAGCCGATCGCGTCAGGTATCT 255945 28 100.0 33 ............................ CTCCAGAGCCGCGCGGCGCGCGGCGGCGTATTC 255884 28 100.0 32 ............................ TGGCTTTGCACGAGTTCGTCGAGCGAGAAGTG 255824 28 100.0 32 ............................ GTCATCCTGGCGAAAGCGTCGTGCCGCTCGCT 255764 28 96.4 32 .A.......................... TCGTAAAGCCCCGGCCTTACCGGCGGTGTACT 255704 28 100.0 32 ............................ AGCGCCTCACGCACGACCTCGCGCATCTGCGC 255644 28 100.0 32 ............................ GCTCTCGCTCAAGCGCCTCGCCGGCTTCGGCC 255584 28 100.0 32 ............................ TGTGCAGCAGGTGCAACAGCAAAGTCAGATAC 255524 28 100.0 32 ............................ GTCGCGCCGATTAGCGATAACGGTCAAGTCGA 255464 28 96.4 33 ..............G............. ATGGCGTCATCGTTGATCGCGGACACGGTGGTA 255403 28 96.4 32 ...T........................ CACTCGATCGCAACGCGCTCAGCGATTGCGAC 255343 28 100.0 32 ............................ TCTGCGGATTGCCGCCCCTTGCGGGCGGCTTT 255283 28 100.0 33 ............................ CGTGAAGTCCGCCGAGCCGTCGATTTGCATCGC 255222 28 100.0 32 ............................ ATCCGCTTACGTGCGGCCTGCGGCCATGCAGG 255162 28 100.0 0 ............................ | A [255138] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CGAACTGCGGTCGCTGATGACTGAAGCTTGGCTCCAGGGCATGACGGATCATGTGAAGGTCACGCGCTGCGTATCGGTGCCGCCGGATGCGGCGCATTGCGTCGTACAACGCCGGCAGTTCAAGACGAATGTCGAGCGGTTGCGGCGACGTCGTATGCGACGCAAGGGCGAATCGGCGGAGCAGGCTGCGGTTGCGATTCCGGACAGCGTCGAACGACGTCCGCATCTGCCGTATGTGCAACTCCGCAGTGCCAGCACGGGGCAGTCGTTTTGCCTGTTCGTGGAGCAGGTGGTATCGGCGTCTGGTGCGGTGGCGGGGACGTTCAACGCTTATGGGCTCAGTTGCGGCGGCAGCGTGCCCTGGTTTTAACCCTTTTTTGGGGGCTGAGGTCGGGGGCCTGAAGGATCAACGGGTTACGATCTGTTCGGGAATTTGGGTACTTTGGCCGTATCTTCGCTAGTTTCCTTTTGAATCAGCGGGTTGCTGTCATTTGGGCCTA # Right flank : CTTCTGAAAATCTGACTCGGCGTCCGCCGTTGAAGCGCCCTCGACGAGCTTGCGAATCGTCAATAAAAGCCATTCTCGAATATACGCGCCCCCAAGCGCTCTCTCCTCCCGAAGCACGTTCGCCCCCGCGCACAGCGTCCCCAAGCACGTCCCGCGTTTCGCTGCCGCTTATCAGTGTATTTGGCTTAAACGCTTTCCCTGATTCCTCTCGAAAAAGATCCCGCATAGCGTGTTGCCGTCGTATCGAGCCGCTCGCAGCTCGACCGTTCTTACGGCGCGCGATCAAACTCGCTGCGCCAAGAGCAACAGAACAGCTTCGTAACTCAATAAAACCAACGCCGGCGAGTGGCTCCTCAGGCAGACTCTTAGAACAACCAAATGAATGATTGGCACCCCACCAATCCGGTCGAACGCCGCTTCATGGCCGTTCACGAAGACTGGATCGGTTTCGCAAGCGATCCGAAAGCGCGACTGCTCTACTGGCACACCAGCGAAAGCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 267368-265126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADFFT010000002.1 Caballeronia sp. BCC1704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 267367 28 100.0 32 ............................ TCGTCGAATGTTACGGCGCCGCGGTAGGCCAC 267307 28 100.0 33 ............................ CTACCGCAACCGCCTCGATGTTTTTCTCGATAA 267246 28 100.0 32 ............................ TAGCCGACCGCGATGCGGAAGCTTCGCGGCGC 267186 28 100.0 32 ............................ GTCGCGCGGGTCAGTCGTCATGCGTTGTCATC 267126 28 96.4 32 ........................C... AGGGAACGGGTTCGGGCGGCCTCGTGCTGCGC 267066 28 100.0 32 ............................ TCGACGAGCAGACCTTCGGCGTAAGCGAGCGG 267006 28 100.0 32 ............................ CTTTCCGACTCGGTCGACAACATCGAAGTGCT 266946 28 100.0 32 ............................ CGAGCGCAGGCCTTGCGCAAGCCCTGTCCGAC 266886 28 100.0 32 ............................ CTCGGACGGATCCGCCGTCGGATTGCCGTCCG 266826 28 100.0 32 ............................ TCTTCGCGCAGGCGGTCGAGGTGAGAGTTGCC 266766 28 100.0 32 ............................ CGCCGAACGTCCCCACGCCGAGCCGAAAGTCG 266706 28 100.0 33 ............................ AGATCGTGTCGCTCGCTGTCACCTGCATGACGC 266645 28 100.0 32 ............................ TGCGAGAATCTCCGCTTCCAGTGCCGTCGCCC 266585 28 100.0 32 ............................ GCCGCAGCTCGCGCGCCGAAAACGCCCTCGGC 266525 28 100.0 32 ............................ TGGTCCCTGGTGAGACTATCGTCGCAGTAGCA 266465 28 100.0 32 ............................ AATATCCAGCGCTTGAGACACCGCCCGCGCTC 266405 28 100.0 32 ............................ AATACGACACCTTCCGCGCGGAGATGATGATC 266345 28 100.0 33 ............................ ATCGCCTGGACGCTCAGCGTGTGGCGCGCCATA 266284 28 100.0 32 ............................ CCACCGCGCATCTTGCAGCGTGTCTTGCAAGC 266224 28 100.0 34 ............................ GTCGAACAACTCCTCGAAGGTTTCCACGATCAAC 266162 28 100.0 32 ............................ AGCAGACGACTGCCCGCGCGGATCGTTACGTG 266102 28 100.0 33 ............................ CAGACCATGACTGTCGTCAGTACGTCGTCCTGC 266041 28 100.0 32 ............................ AGCCGGGGCGGAGTCGTGATGTCAAACTCCGT 265981 28 100.0 32 ............................ TATGTGGCAAATCTTCAGATATCGCGCACGCT 265921 28 100.0 32 ............................ GATCAGGTGAAGCGGATCGTCGCCCCACCAGC 265861 28 100.0 32 ............................ GATTACTTTTACGAGAAGTACCAGGAGTGGCG 265801 28 96.4 32 ...............A............ CGTCGCGCCGATGCACCATTAATCCATGCGGC 265741 28 96.4 32 ................C........... TCGCCCTGCAAACGGCGGATGTGGATCTCGTC 265681 28 100.0 32 ............................ ACTGCGCAGCGTCGGCATCTTCCTGAAAACCT 265621 28 96.4 32 ..G......................... GTGCTCGGGTTGAGCATGACGAAGAGTGCCGT 265561 28 96.4 32 ..........C................. TCGTTGATCTTCGCCGACATCAGGGCCTTCGC 265501 28 100.0 32 ............................ ATCGACTGAATGTCGCTCAGCTTGTTCATGGG 265441 28 96.4 32 .............A.............. TTGATGCCGTACGGCGCGACGAGGTCGCGCGC 265381 28 100.0 21 ............................ AGACCGATGGACGCGCCCGGA Deletion [265333] 265332 28 96.4 32 ...........................G CGCCGAATCACCGGTGTGCGCCGGGTCATATC 265272 28 96.4 32 ...................C........ ACTTGCCGTCCTCGATCTTGCGGCGGATCGCT 265212 28 92.9 32 ...............C........C... GCGTTGCAAGCCAGTTAGCAACGGTTCCTGCC 265152 27 67.9 0 A.C.........C-.CA.....A.T..C | ========== ====== ====== ====== ============================ ================================== ================== 38 28 98.2 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CACGCCAATTGGGCGTGATTGCTGGTTGATTAGTTAGGCGCGACGGGCGGTTTGTGTTGCACTGACTGCTGAGAGAGCCCTGGCTTCGGCCGGGGCTTTGTCGTTTGTGCGGTCGTGGTTCAGTTGTCTTGGCGCCGTCTGAAGCACGGCTCGCCGGTCATTACGTGCTGGTCGCCGCAGCGCCGGGACATCCGCGTCGATGATGCGTAAGCCGATCCTGCGCGGTACGGCGGTGGTTGTTCGCTTTCCACATTTGACCGTCCAGCGGCACGCTTTGACACGCAGTCGGTCATCGTGGATGTGTTGGCCGGCGACGTCGGTCGGTAAAATCGTGGGACCGGGTGCAGACGATGCGACGATTGCCGGTTAAGCCTTTTTTTCGTCGGGCTCCTTCTCGCCTTTTGAATCAAGGTCTTGCGATGGTGGCGGGGTTTTGGGTTATCTAGGTCTGGCGAGGGAAATGTCTCTTTGAATCAAAGTGTTCGCATGTTTTGTGTCTA # Right flank : CACCCGGAAAGACCATAAACAAACCCTCACCGCTCGCCCTCCTTGCGCCAGCGCAAAATTGACGATTCCCGAGTACGACAATCGATTACCCCTCTGCTAGAGTCGATCCCACAACGACCAATCAGACTCTTCACAAACATTCGAGGCAGCGTGGAATCGATACGGACTACGGACCTTAAGACCATCCTGCATTCAAAGCGCGCCAATCTGTACTACTTGGAACATTGCCGCGTACTCGTGAAGGGCGGACGCGTCGAATATGTGACTGACGCGGGTAAGAAAAGCCTCTATTGGAATATCCCGATCGCCAATACAACCAGTATCCTGCTCGGAACAGGCACGTCCGTCACGCAGGCGGCCATGCGCGAGCTCGCCAAGGCGGGAGTGCTGGTGGGCTTTTGCGGCGGTGGCGGCACGCCGCTCTTCAGCGCGAACGAGACTGACGTCGAAGTGGCGTGGATGTCGCCTCAAAGCGAATACCGGCCGACCGAGTATCTTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //